Rhodococcus qingshengii: C1M55_12830
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Entry
C1M55_12830 CDS
T05315
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
rqi
Rhodococcus qingshengii
Brite
KEGG Orthology (KO) [BR:
rqi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rqi03016
]
C1M55_12830
Enzymes [BR:
rqi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
C1M55_12830
Transfer RNA biogenesis [BR:
rqi03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
C1M55_12830
Prokaryotic type
tRNA splicing ligases
C1M55_12830
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AUS31905
LinkDB
All DBs
Position
1:complement(2722849..2724030)
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AA seq
393 aa
AA seq
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MEKITKRLWNWASILDENTREQALRTSQMPFVRPHLALMPDAHLGAGATVGSVIPTEGAI
MPAAVGVDIGCGMIAVKTQFNARDLQGRDLSVLRHSIERSVPLSAGVYNKTLSDTAKIRI
AELEAMAGDRLAFYDKFKNNWRFQLGTLGSGNHFIEVTLDESDGVWLFLHSGSRGIGNKL
AQHHIKIAKDLCERWYINLPDPDLAYLVEKTPEFDSYITDLNWAQHFALLNREEMMDRVV
KDFAHFMGDGKPAIIDEVERINCHHNFTQKEFHMGRGVWLSRKGAIKADEGTPGLIPGSM
GTASYVVVGKGNVPSFKSSPHGAGRVYGRNQARKTFTIEDLDKAMVGIEYKRSAAFLDEI
PGAYKDIDVVMDDAKDLVEIRHTLRQIVNVKGN
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atggagaagatcaccaagaggttgtggaactgggcatcgatactcgacgaaaacactcgc
gagcaagcgctgcgcacgtcccagatgccttttgtccgtccacatctggcattgatgccg
gatgcgcacctcggtgcgggagcgacggtgggttcggtcattccgacggaaggcgcaatc
atgcccgccgccgtcggagtcgatatcggctgcggaatgatcgcggtcaaaacccagttc
aacgcacgcgaccttcaaggccgcgacctgagcgtacttcgccacagcatcgaacgctcc
gttccgctctcggcaggtgtctacaacaagacgctgagcgacacggcgaaaatccgcatc
gcagaactcgaggcaatggcgggcgatcgcctggccttctacgacaagttcaagaacaac
tggaggtttcagctcggaacgctgggctctggtaaccacttcatcgaggtgacactcgat
gaaagcgacggcgtctggctgttcctgcactcgggaagccgcggtatcggaaacaagctc
gcgcagcatcacatcaagatcgccaaggacttgtgcgagcggtggtacatcaaccttccc
gatccggatcttgcctacctggtcgagaagacacccgaattcgactcgtacatcaccgat
ctcaactgggctcagcacttcgctctgctcaaccgcgaagagatgatggaccgcgtcgtg
aaggacttcgcgcatttcatgggagacggcaagcccgcgatcatcgacgaagtcgagcgg
atcaactgccaccacaacttcacccagaaggagttccacatgggcaggggtgtgtggctg
agccgtaagggtgcgatcaaggcagacgagggcacgcccgggctcatccccggttcgatg
gggacggcgagttacgtcgtcgtcggaaagggaaacgtaccgtcgttcaagtccagcccc
cacggcgcgggtcgggtgtacggacgtaaccaggcacgcaagaccttcaccatcgaagat
ctcgacaaggcaatggtcggcatcgaatacaagcgttccgcggcgttcctcgacgagatc
ccgggtgcgtacaaggacatcgacgtcgtgatggacgacgcgaaggacttggtcgagatt
cgacacacgctgcgtcagatcgtgaacgtcaagggcaactga
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