Rhodococcus qingshengii: C1M55_13805
Help
Entry
C1M55_13805 CDS
T05315
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
rqi
Rhodococcus qingshengii
Pathway
rqi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rqi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C1M55_13805
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rqi03019
]
C1M55_13805
Messenger RNA biogenesis [BR:
rqi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
C1M55_13805
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RMMBL
Lactamase_B_2
Lactamase_B
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
AUS32071
UniProt:
A0AA34VZ43
LinkDB
All DBs
Position
1:2935010..2937019
Genome browser
AA seq
669 aa
AA seq
DB search
MTRPPRRRSASRQAGPPSPPAPETAAKAAPVEAPAAPAAEAAPAAAAPPKKAAATKSAAT
KSAATKSAAPKKSTEERSPRKSSGGNRPAASKSGNGRGNKRPENRPAVDPTGRLGTPPKA
PASGLRIVALGGIGEIGRNMTVFEHRGKLLIVDCGVLFPEDQQPGVDLILPDFRYIEDRM
DDVEAVILTHGHEDHIGALPFLLRLRADIPVIGAKFTLALVAAKCREHRLRPNLVEVVEG
NTTTHGPFDCEYFAVNHSIPDALAIAIRTDAGVVLHTGDIKLDQLPLDGRLTDLAGFSRL
GDEGVDLFLVDSTNAEVPGFVTPEREIGGVLDNVIGKAKQRVIVASFASHVHRIQQVVDV
AARYNRRIVFVGRSMVRNMQIAQDLGYLTVPDGLVVDIDTAATLPDDRLVLISTGSQGEP
LAALSRMARGEHRQINIRANDLVVLASSLIPGNENSVFAVVNGLAKRGATVVTQQSAKVH
VSGHASAGELLYLYNAVRPTNAMPVHGEWRHLRANAALAKATGVPEERIVLAEDGVVVDM
VDGLAEIVGRVPVGHVYVDGLSVGDVGEPTLSDRLVLGEGGFIAITIVINESTGRAVSTP
EVSGRGFSDDPTALKAAADLVESDLARLASEGVIDAHRIAQSVRRVVGRWVADKYRRRPM
IIPTVIAVP
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgacccgtcccccccgacgtcgtagtgccagtcgtcaagccggtccgccttcgcctccg
gctcccgaaacggccgcaaaggccgcaccggtagaggcaccagctgcgccggcggcagaa
gcggcccccgccgcagccgccccgcccaagaaggccgcagcaaccaaatctgcagcaacc
aagtccgctgccaccaaatctgctgcacccaagaagtcgaccgaagagaggtcgccgcgc
aaatcttccggcggtaaccgaccggcagcatcgaagtcgggcaacgggcgcggaaacaag
cgccccgagaaccgtccggccgtcgatcccacgggtcgcctcggaacacccccgaaggcg
ccggcatcgggtctgcgcatcgtcgcgctgggcggcatcggcgaaatcggtcgcaacatg
acggtgttcgagcaccgtggcaagttgctgatcgtcgactgcggtgtgctgttccccgag
gaccagcagcctggcgtcgacctgatcctcccggacttccgctacatcgaagaccgtatg
gacgacgtcgaagccgtcatcttgactcacggacacgaggaccacatcggtgctctgccg
ttcttgctgcgtctgcgcgcggacattccggtcatcggcgcgaagttcactctcgctctc
gttgccgccaagtgccgcgagcatcgcctgcgtccgaacctggtcgaggtcgtcgaggga
aacaccaccacccatggcccgttcgactgcgagtacttcgcggtcaaccactcgattccc
gacgctctcgcgatcgcgattcgcaccgacgccggcgtcgtactgcacaccggtgacatc
aagctcgatcagctgcctctcgacggccgcctgaccgacctcgccggattctcccgcctg
ggcgacgagggcgtcgacctgttcctcgtcgactcgacgaacgccgaggttccgggattc
gtcacgcccgagcgcgaaatcgggggagtgctcgacaacgtcatcggcaaggcgaagcag
cgtgtcatcgtggcatcgttcgccagccatgtgcatcgcatccagcaggtcgtcgacgta
gccgctcggtacaaccgccgcatcgtcttcgtcggccgctcgatggtccgcaacatgcag
atcgcccaggatctgggctacctgacggtgcccgacggcctcgtcgtagacatcgacacc
gccgccacccttcccgacgatcgcctggtgctcatttcgacgggttcgcagggtgagccg
ttggcagcgctctcgcggatggcgcgcggcgaacaccgtcagatcaacatccgcgccaac
gaccttgtcgttctcgcgtcttcgctgatcccgggcaacgagaactccgtttttgccgtg
gtcaacggtttggccaagcgcggtgccaccgtcgtgacccagcagagcgccaaggttcac
gtctcgggccacgcgtccgccggtgagttgctctacctgtacaacgcggttcggcccacc
aatgccatgcccgtccacggtgaatggcggcacctacgtgccaacgccgcgctggcaaag
gcaaccggcgtgccggaagagcgcatcgtattggccgaggacggcgtcgtggtcgacatg
gtggacggcctcgccgagatcgtcggacgcgtaccggtcggacacgtctacgtcgacggt
ctgtccgtcggcgatgtcggtgagccgacgctgtccgatcgtctcgtgctcggtgagggc
ggcttcatcgcgatcaccatcgtcatcaacgagtcgacgggccgtgcggtcagcaccccc
gaggtgtccggtcgcggcttctccgacgatccgactgcgctcaaggctgccgcggatctc
gtggaatcggacctggcccggttggcgagcgaaggcgtcatcgacgctcatcgcatcgcg
cagtcggtgcgccgcgtcgtcggacgctgggttgcggacaagtaccgccgccgtccgatg
atcattccgacggtcatcgcggttccgtag
DBGET
integrated database retrieval system