KEGG   Rhodococcus qingshengii: C1M55_13805
Entry
C1M55_13805       CDS       T05315                                 
Name
(GenBank) ribonuclease J
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
rqi  Rhodococcus qingshengii
Pathway
rqi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rqi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    C1M55_13805
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rqi03019]
    C1M55_13805
Messenger RNA biogenesis [BR:rqi03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     C1M55_13805
SSDB
Motif
Pfam: RNase_J_C RMMBL Lactamase_B_2 Lactamase_B Lactamase_B_6
Other DBs
NCBI-ProteinID: AUS32071
UniProt: A0AA34VZ43
LinkDB
Position
1:2935010..2937019
AA seq 669 aa
MTRPPRRRSASRQAGPPSPPAPETAAKAAPVEAPAAPAAEAAPAAAAPPKKAAATKSAAT
KSAATKSAAPKKSTEERSPRKSSGGNRPAASKSGNGRGNKRPENRPAVDPTGRLGTPPKA
PASGLRIVALGGIGEIGRNMTVFEHRGKLLIVDCGVLFPEDQQPGVDLILPDFRYIEDRM
DDVEAVILTHGHEDHIGALPFLLRLRADIPVIGAKFTLALVAAKCREHRLRPNLVEVVEG
NTTTHGPFDCEYFAVNHSIPDALAIAIRTDAGVVLHTGDIKLDQLPLDGRLTDLAGFSRL
GDEGVDLFLVDSTNAEVPGFVTPEREIGGVLDNVIGKAKQRVIVASFASHVHRIQQVVDV
AARYNRRIVFVGRSMVRNMQIAQDLGYLTVPDGLVVDIDTAATLPDDRLVLISTGSQGEP
LAALSRMARGEHRQINIRANDLVVLASSLIPGNENSVFAVVNGLAKRGATVVTQQSAKVH
VSGHASAGELLYLYNAVRPTNAMPVHGEWRHLRANAALAKATGVPEERIVLAEDGVVVDM
VDGLAEIVGRVPVGHVYVDGLSVGDVGEPTLSDRLVLGEGGFIAITIVINESTGRAVSTP
EVSGRGFSDDPTALKAAADLVESDLARLASEGVIDAHRIAQSVRRVVGRWVADKYRRRPM
IIPTVIAVP
NT seq 2010 nt   +upstreamnt  +downstreamnt
atgacccgtcccccccgacgtcgtagtgccagtcgtcaagccggtccgccttcgcctccg
gctcccgaaacggccgcaaaggccgcaccggtagaggcaccagctgcgccggcggcagaa
gcggcccccgccgcagccgccccgcccaagaaggccgcagcaaccaaatctgcagcaacc
aagtccgctgccaccaaatctgctgcacccaagaagtcgaccgaagagaggtcgccgcgc
aaatcttccggcggtaaccgaccggcagcatcgaagtcgggcaacgggcgcggaaacaag
cgccccgagaaccgtccggccgtcgatcccacgggtcgcctcggaacacccccgaaggcg
ccggcatcgggtctgcgcatcgtcgcgctgggcggcatcggcgaaatcggtcgcaacatg
acggtgttcgagcaccgtggcaagttgctgatcgtcgactgcggtgtgctgttccccgag
gaccagcagcctggcgtcgacctgatcctcccggacttccgctacatcgaagaccgtatg
gacgacgtcgaagccgtcatcttgactcacggacacgaggaccacatcggtgctctgccg
ttcttgctgcgtctgcgcgcggacattccggtcatcggcgcgaagttcactctcgctctc
gttgccgccaagtgccgcgagcatcgcctgcgtccgaacctggtcgaggtcgtcgaggga
aacaccaccacccatggcccgttcgactgcgagtacttcgcggtcaaccactcgattccc
gacgctctcgcgatcgcgattcgcaccgacgccggcgtcgtactgcacaccggtgacatc
aagctcgatcagctgcctctcgacggccgcctgaccgacctcgccggattctcccgcctg
ggcgacgagggcgtcgacctgttcctcgtcgactcgacgaacgccgaggttccgggattc
gtcacgcccgagcgcgaaatcgggggagtgctcgacaacgtcatcggcaaggcgaagcag
cgtgtcatcgtggcatcgttcgccagccatgtgcatcgcatccagcaggtcgtcgacgta
gccgctcggtacaaccgccgcatcgtcttcgtcggccgctcgatggtccgcaacatgcag
atcgcccaggatctgggctacctgacggtgcccgacggcctcgtcgtagacatcgacacc
gccgccacccttcccgacgatcgcctggtgctcatttcgacgggttcgcagggtgagccg
ttggcagcgctctcgcggatggcgcgcggcgaacaccgtcagatcaacatccgcgccaac
gaccttgtcgttctcgcgtcttcgctgatcccgggcaacgagaactccgtttttgccgtg
gtcaacggtttggccaagcgcggtgccaccgtcgtgacccagcagagcgccaaggttcac
gtctcgggccacgcgtccgccggtgagttgctctacctgtacaacgcggttcggcccacc
aatgccatgcccgtccacggtgaatggcggcacctacgtgccaacgccgcgctggcaaag
gcaaccggcgtgccggaagagcgcatcgtattggccgaggacggcgtcgtggtcgacatg
gtggacggcctcgccgagatcgtcggacgcgtaccggtcggacacgtctacgtcgacggt
ctgtccgtcggcgatgtcggtgagccgacgctgtccgatcgtctcgtgctcggtgagggc
ggcttcatcgcgatcaccatcgtcatcaacgagtcgacgggccgtgcggtcagcaccccc
gaggtgtccggtcgcggcttctccgacgatccgactgcgctcaaggctgccgcggatctc
gtggaatcggacctggcccggttggcgagcgaaggcgtcatcgacgctcatcgcatcgcg
cagtcggtgcgccgcgtcgtcggacgctgggttgcggacaagtaccgccgccgtccgatg
atcattccgacggtcatcgcggttccgtag

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