Rhodococcus qingshengii: C1M55_16595
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Entry
C1M55_16595 CDS
T05315
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
rqi
Rhodococcus qingshengii
Pathway
rqi03030
DNA replication
rqi03410
Base excision repair
rqi03420
Nucleotide excision repair
rqi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rqi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
C1M55_16595
03410 Base excision repair
C1M55_16595
03420 Nucleotide excision repair
C1M55_16595
03440 Homologous recombination
C1M55_16595
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rqi03032
]
C1M55_16595
03400 DNA repair and recombination proteins [BR:
rqi03400
]
C1M55_16595
Enzymes [BR:
rqi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
C1M55_16595
DNA replication proteins [BR:
rqi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
C1M55_16595
DNA repair and recombination proteins [BR:
rqi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
C1M55_16595
NER (nucleotide excision repair)
GGR (global genome repair) factors
C1M55_16595
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_polI_exo1
baeRF_family2
HHH_5
DNA_pol_lambd_f
Motif
Other DBs
NCBI-ProteinID:
AUS32563
LinkDB
All DBs
Position
1:complement(3556667..3559414)
Genome browser
AA seq
915 aa
AA seq
DB search
MSPATTTRSSTSTAPAGTTGKADDRPLLMLLDGHSLAFRAFYALPAENFKTHSGQATNAV
YGFTSMLINLLRDEQPTHLAAAFDVSRQTFRADLFPEYKAQRAKAPDEFKGQIDITKDVL
GALGIPVMAEEGFEADDVIATLTTQAEALGYRVLVVTGDRDSLQLVTDNVTVLYPKKGVS
ELTRFTPTAVEEKYSLSPAQYPDFAALRGDPSDNLPGIPGVGEKTATKWIREYGDLQGLV
DNVDKVRGKVGDSLRENLANVLLNRQLTEMVRDVPLPYTPEQLVLAPWDREKIHALFDDL
EFKVLRDRLFATLSSSEPEAEEGFEVSGDALAPGAVAAWLDAHARTGERHGVTVLGTRTP
FAGDVTALAIAASDGECAYIAASTATPEDEAALGDWLADASQPKALHEAKWAIHALRGRG
WTLGGLTSDTALAAYLVRPGQRSFNLDDLSLRYLKRELRAETSGQEQLSLLDDTEQLDAE
AAETAMLSAQAVLDLAAALDTELASIESKSLLSDMELPLTIELAQIEATGIAVDSAHLHD
LQSRFASQVADAANSAYEVIDKQINLGSPKQLQVVLFEELDMPKTKKTKTGYTTDAEALQ
GLFDKTGHPFLEHLLAHRDATRMKVTVDGLLKAVAEDGRIHTTFNQTVAATGRLSSTDPN
LQNIPVRNDAGREIRDGFVVGQGFDVLLTADYSQIEMRIMAHVSGDEGLIEAFNTGEDLH
SFVGSRAFGVPIEEVTPELRRRVKAMSYGLAYGLSAYGLASQLKISTEEAKQQMDAYFAR
FGGVRDYLHAVVEQARKDGYTSTLYGRRRYLPDLNSDNRQRREVAERAALNAPIQGTAAD
IIKVAMINVQKALADAGLKSRMLLQVHDELVLEVVASELEEVTALVKDKMATAIELSVPL
DVSVGTGRSWDSAAH
NT seq
2748 nt
NT seq
+upstream
nt +downstream
nt
gtgagccccgcaaccacaactcggtccagcacgtccaccgctccagccggcaccaccggc
aaggcggacgatcgccctctcttgatgcttctcgacgggcattcgttggcgtttcgcgcc
ttctacgcgctgcctgcagagaacttcaagacacacagtgggcaggccaccaacgcggtg
tacggcttcacgtcgatgttgatcaaccttcttcgtgacgagcagcccacccacctggcc
gcggccttcgacgtgtcgcgtcagacgtttcgcgccgacctgttccccgaatacaaggcg
cagcgcgcgaaggctccggacgaattcaagggccagatcgacatcaccaaggacgttctc
ggcgcgctgggcatcccggtcatggccgaggaaggtttcgaagccgacgacgtgatcgcc
accttgaccacgcaggcggaggccctcggataccgggttctcgtcgtgaccggtgaccgt
gactcgctgcaactggtgaccgacaacgtcactgtgctctacccgaagaagggtgtctcg
gagctcacccgattcacgccgacggccgtagaggagaagtacagcctcagcccggcgcag
tatcccgattttgctgcactgcgcggcgacccgagtgacaacctccccggcatccccggc
gtcggcgagaagaccgccaccaagtggatccgtgagtacggcgacctgcagggactggtc
gacaacgtggacaaggtccgcggcaaggtgggcgactcactgcgggagaacctcgcgaac
gtcctgctcaatcgtcagctcaccgaaatggttcgcgacgttcccttgccgtacacgccc
gagcagttggtgttggccccgtgggaccgcgagaagattcatgcgttgttcgacgatctc
gagttcaaggttctccgcgatcgactgttcgcgaccctgtcgtcgtccgagcccgaagca
gaggaagggttcgaggtcagcggcgacgcactcgccccgggtgcggttgccgcgtggctc
gacgcccacgcacgaaccggtgagcgtcacggcgtgacggtgctcggaaccagaactccg
tttgccggcgacgtcactgcactcgcgatcgcggcctccgacggtgaatgtgcatacatc
gcggcgtcgacggcaacaccggaagacgaagcagctctcggtgattggctcgccgacgca
tcgcagccgaaggcgctgcacgaagccaagtgggcgatccatgctctgcgtgggcgcggt
tggacgctcggtggactgaccagcgacactgctctggccgcgtacctcgtccggccgggc
cagcgcagcttcaatctcgacgacctctcgctccgctacctcaagcgtgaactgcgcgcc
gaaacatccggccaggaacagctttcactgctcgacgacaccgaacagctcgatgccgaa
gcggccgagaccgcgatgctcagcgctcaggccgttctcgacttggcagctgcactggac
accgagttggcgtcgatcgaatccaagtcgctcctctccgacatggaactgccgttgacg
atcgagctcgctcagatcgaggccaccggcatcgccgtcgacagcgcgcatctgcacgat
cttcagagccgtttcgcctcccaggtcgccgacgcagcaaactcggcctacgaggtgatc
gacaagcagatcaacctgggttcgccgaagcagctgcaggtggtcttgttcgaagaactc
gacatgcccaagacgaagaagacgaagacgggctacaccaccgacgccgaggcgttgcag
ggtctgttcgacaagacaggacacccgttcctcgaacaccttctcgcgcaccgtgatgcg
acgcgtatgaaggtgaccgtcgacggtcttctcaaggccgtagccgaagacggacgcatt
cacacgacgttcaaccagacggttgccgcgaccggacgtctgtcgtcgaccgatccgaac
ttgcagaacatcccggtgcgaaacgacgcggggcgcgagattcgcgacggattcgtagtc
gggcaagggttcgacgttctactcactgccgactacagccagatcgaaatgcgcatcatg
gcgcacgtatcaggcgacgagggactgatcgaggcattcaacaccggtgaggacctgcac
agctttgtcggctcgcgcgcattcggtgtaccgatcgaagaggtgactccagaactgcgg
cgccgggtcaaggcgatgtcgtacggtctggcctacgggctcagtgcctacggattggcg
tcgcagctgaagatttcgaccgaagaagcgaagcagcagatggatgcgtacttcgctcgt
ttcggcggcgtgcgggattacctccacgcggtggtcgagcaggcacgtaaggacggctac
acctcgacgctctacggtcgtcgtcgctacctgccggacctcaacagcgacaaccgtcag
cgtcgtgaggttgccgaacgtgctgccctcaatgcgccgatccagggcactgcggccgac
atcatcaaggtggcgatgatcaacgtgcagaaggctctcgctgacgccggattgaagtcg
cgcatgctgttgcaggtgcacgacgaattggtgctcgaagtggttgcctccgagttggag
gaggtcaccgcgctggtcaaggacaagatggccacagccatcgagctgtcggtgcctctg
gatgtttcggtgggaaccggtcgaagctgggacagcgcggctcactag
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