Rhodococcus qingshengii: C1M55_18710
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Entry
C1M55_18710 CDS
T05315
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rqi
Rhodococcus qingshengii
Pathway
rqi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rqi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C1M55_18710
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rqi03019
]
C1M55_18710
03009 Ribosome biogenesis [BR:
rqi03009
]
C1M55_18710
Enzymes [BR:
rqi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
C1M55_18710
Messenger RNA biogenesis [BR:
rqi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
C1M55_18710
Ribosome biogenesis [BR:
rqi03009
]
Prokaryotic type
rRNA processing factors
C1M55_18710
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
AUS32932
LinkDB
All DBs
Position
1:complement(4024165..4027413)
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AA seq
1082 aa
AA seq
DB search
MADQSPTESDSSTTPEFPDKMRVHALAKLLGVTSKQVLAEAAALGTELRSAQSSLHRDVA
QRIHASLTSAAEAIEPVVAELDTLIDPVVEAPVAEEPAAEAPVEAAPVAEAPAEKPVRAR
RTRKKVVVEEPAAEETVDPAVAEISAGLDAAAALQSKEAEQSDLFTSFEAPQTHQPEVAP
AAPQVPLFLQPDLEAAEVAPRRRRARREPAAPAVVEEKQTTAEAETVVPEAAPVAVPAVE
EPAVTAPQTEGESAESEDEDDDQPRRRRRGRRGRGRGRGEQGGEQGSDEESDTATESEQE
SAPAAVEKQTDDAAGEESGDKSESTADADSENADDSDLDADGSSRRRRRRRRRKTGTDGA
TDATATSEDDPPNTVVHEREPRNKTRVKDEVQGISGSTRLEAKRQRRRDGRDAGRRRPPI
LTESEFLARREAVDRVMVVRDRADSGQPHATTQVAVLEDGVLVEHFVTNSASASMVGNVY
LGRVQNVLPSMEAAFIDIGRGRNGVLYAGEVNWEAAGLGGNSRKIEQALKPGDQVLVQVS
KDPVGHKGARLTTQISLAGRFLVYVPGGTSTGISRKLPDTERKRLKEILRDIVPADAGVI
IRTASEGVSEEELARDVTRLQAQWAGIEEQAAAADTGKSGNPQALYEEPDMLVKVIRDLF
NEDFSKLVIEGEKAHTTVENYINSVAPDLLPRLEKYTPNNGIDVFAARRIDEQLAKALDR
KVWLPSGGTLVIDRTEAMTVVDVNTGKFTGAGGNLEETVTRNNLEAAEEIVRQMRLRDIG
GMIVVDFIDMVLESNRDLVLRRLTECLGRDRTRHQVSEVTSLGLVQMTRKKLGTGLVEAF
STTCEHCHGRGIIVHSEPVEVKSSDDGGSRSGSQRSDSGTSRKNKRGRGDKSASTESNGQ
EAPAPEVPAVDATVKRAHPVALAMASHHHDDDETVAADSTESDSAGVSSGDDASKSADRQ
QDRPIDTPAAAEHHDVPVVDSAAEEVSAVDNESAAASTEAAPRGRRRSRRASRAASAPVA
EAAPEVGTVFVIPTPEPVVDAVAENVPAPATEVPAEEEVVVVKRPRRRRAAARPAGPPVD
GE
NT seq
3249 nt
NT seq
+upstream
nt +downstream
nt
gtggccgatcaatccccaaccgaatcagattccagcaccaccccggaatttcccgacaag
atgcgcgtacacgcgctggcgaagttgctcggcgtcaccagcaagcaggtccttgccgaa
gccgcagcgctcggtaccgaattgcgcagcgcgcagtcgagtctccaccgtgacgtcgct
cagcggattcatgcctcgttgacttccgcggccgaggccatcgagcccgtcgtcgccgag
ctcgacaccctcatcgacccggttgtcgaggcgccggttgccgaggagcctgctgcagaa
gctcccgtggaggctgctcctgttgcagaggctccggccgagaagcctgtcagggctcgt
cgcactcgcaaaaaggtcgtcgtcgaagaacctgcagcagaagaaacagtggatccggct
gtcgccgagatcagcgctggactcgacgccgcagctgcgctgcagagcaaggaagccgag
cagtccgatctgttcacttccttcgaggcgccgcagacccatcagcccgaggtggctccc
gccgcgccgcaggtcccgctgttcctgcagccggatctcgaagccgccgaggtagctccg
cgtcgccgtcgcgcacgccgcgagcctgctgcaccggcggtcgtcgaagagaagcagaca
accgcggaagccgaaaccgtcgttcccgaggcagcgccggttgcagttcctgccgtcgaa
gagccggctgtgaccgcaccgcaaaccgagggcgagagcgccgagtccgaggacgaggac
gacgatcagccgcgtcgccgtcgtcgtggacgccgtggacgtggacgtggtcgcggtgaa
cagggtggcgagcagggttcggacgaagagtcggataccgctaccgaatcggagcaggaa
tctgcccctgcggcagtcgagaagcaaaccgacgacgctgccggcgaagaatccggtgat
aagtccgagtccaccgctgatgcggattccgagaatgccgacgattccgatctcgatgcc
gacggatcgagccgccgtcgccgtcgtcgtcgtcgtcgcaagaccggcaccgacggcgcc
accgacgcgactgcgacgtccgaggacgatccgccgaacaccgtcgttcacgagcgcgag
ccgcgcaacaagacccgcgtcaaggacgaggtccagggcatcagtggttcgacacgtctg
gaagcgaagcgtcagcgtcgccgcgacggtcgtgacgccggtcgtcgtcgtccgccgatt
ctgaccgagtcggagttcctcgcgcgtcgtgaggccgtcgatcgcgtcatggtcgtgcgc
gatcgggcagacagcggtcagccgcatgcgactacacaggtagcagtcctcgaagacgga
gtgctggtcgagcacttcgtcaccaactcggcgtccgcgtcgatggtcggcaacgtgtac
ctcggacgtgtccagaacgtgctccccagcatggaagctgcgttcatcgacatcggacgt
ggccgcaacggtgttctctacgccggtgaggtcaactgggaggctgccggtctcggtggc
aactcgcgcaagatcgagcaggctctcaagcctggcgatcaggtgctcgttcaggtcagc
aaggatccggtcggccacaagggtgctcgactgacgacacagatttcgcttgccggtcgt
ttcctcgtctacgtgcctggtggtacgtccacgggtatcagccgcaagcttccggacacc
gagcgcaagcgtctcaaggaaatcttgcgcgacatcgtgcccgccgacgcgggcgtgatc
attcgcacggcgtccgagggggtcagcgaagaagagttggcgcgcgacgtgactcgtctg
caggctcagtgggccggcatcgaggagcaggccgcggctgcggacaccggcaagtccggc
aacccgcaggcgttgtacgaagagcctgacatgctggtcaaggtcattcgtgatctgttc
aacgaggacttctccaagctggtcatcgagggcgagaaggcgcacacgacggtcgagaac
tacatcaactccgttgcgcccgacctgcttccgcggctcgagaagtacacgccgaacaac
ggtatcgacgtcttcgcggctcgccgtatcgacgagcagttggccaaggcactcgatcgc
aaggtgtggctgccgtccggcggcaccctggtgatcgaccgcaccgaggccatgaccgtc
gtcgacgtcaacaccggcaagttcaccggagccggcggaaacctcgaagagaccgtcacc
cgtaacaacctcgaagcggccgaggagatcgttcgccagatgcgcctgcgggacatcggc
ggaatgatcgtcgtcgacttcatcgacatggttctcgaatcgaaccgggacctggtcctg
cgtcggctcaccgaatgcctgggtcgcgatcgcacgcgccatcaggtgtcggaggtcacg
tcactcgggctcgtgcagatgacgcgcaagaagttgggcaccggattggtcgaggccttc
tcgaccacctgtgagcactgccacggccgcggcatcatcgtccattccgagcccgtcgag
gtgaagtcctcggacgacggaggatcgcgttcgggctcgcagcgcagtgattccggtacc
tcgcgcaagaacaagcgtggccgcggagacaagtcggcttcgaccgagtccaacggacag
gaagctccggcgccggaggttccggccgtcgacgcgacggtcaagcgggctcatccggtg
gcattggcgatggcctcgcatcaccacgacgacgacgagaccgtcgcggccgactcgacc
gagtctgattccgccggtgtgtcttcgggggacgatgcatccaaaagtgccgatcggcaa
caagatcggccgatcgatactcctgctgctgctgagcaccatgacgttcctgttgtggac
tctgctgcggaagaagtatccgcagtggacaacgagtcggccgcagcttcgaccgaagca
gctccgcgcggtcgtcggcgtagtcgccgggcgtcgcgggcagcgtcggcaccggttgcc
gaggcagctcccgaggtgggcacggtcttcgtgattccgactccggaacccgtggtggac
gcggtcgcggaaaacgttccggctccggccaccgaagttccggccgaggaagaagttgtc
gtcgtcaagagaccccgtcgcaggcgtgcagcagcacgtcccgcaggtcctccggtagac
ggagagtaa
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