Rhodococcus qingshengii: C1M55_20205
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Entry
C1M55_20205 CDS
T05315
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rqi
Rhodococcus qingshengii
Pathway
rqi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rqi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C1M55_20205
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rqi03019
]
C1M55_20205
03009 Ribosome biogenesis [BR:
rqi03009
]
C1M55_20205
Enzymes [BR:
rqi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C1M55_20205
Messenger RNA biogenesis [BR:
rqi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C1M55_20205
Ribosome biogenesis [BR:
rqi03009
]
Prokaryotic type
rRNA helicases
C1M55_20205
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
UvrA_inter
HEM4
Motif
Other DBs
NCBI-ProteinID:
AUS33181
LinkDB
All DBs
Position
1:complement(4375773..4377548)
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AA seq
591 aa
AA seq
DB search
MSDIERDPEPPTFADLDIDDRVLKALSDVGYESPSPIQAATIPPLLEGKDVVGLAQTGTG
KTAAFAVPVLSRIDTSIKQTQALVLAPTRELALQVAEAFGKYSAHIPGLNVLPIYGGQSY
GVQLSGLRRGAHVVVGTPGRVIDHLEKGTLDLTNLKYLVLDEADEMLKMGFQEDVERILR
DTPGDKQVALFSATMPGSIRRISKQYLNNPVEITVKSKTSTASNITQRYIQVAHQRKLDA
LTRVLEVEAFEAMIIFVRTKQATEDLAEKLRARGHSAAAINGDIVQAQRERTIGQLKNGA
LDILVATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRQGDALLFVAPRERH
LLKSIEKATRQPLAEMQLPSVDDVNAQRVAKFGDSITESLASENLAMFRKMIEDYDQEHD
VPLIDIAAALALQSRDGEAFLLSPEPPAPPRREREPREPRPPRRFDDGPAPRSRGPEGQE
LAAYRIAVGKRHRVVPGAIVGAIANEGGLRRSDFGHISIRPDHSIVELPADLSNETLEAL
RRTRISGVLIQLQPDFGPPQGRPSGRGDRGGRDDRGGRDDRRGGGRDRYND
NT seq
1776 nt
NT seq
+upstream
nt +downstream
nt
atgagtgatattgagcgtgaccccgaacccccaacatttgccgacctcgacatcgatgat
cgggtactgaaggcactgtcagacgtgggctacgagtcgccctcgcccattcaggctgcc
accattccgccgctgctcgaaggcaaggacgtcgtcggtctcgcacagaccggtaccggc
aagaccgcagccttcgcagttccagtcctgtcgcggatcgacacgtcgatcaagcagacc
caggcgctggtgcttgctcccacgcgtgagctggcgcttcaggttgccgaggcattcggc
aagtactccgcgcacatccccggactcaacgtgctgccgatctacggtggccagagctac
ggcgtccagctgtcgggcctgcgccgcggcgcacacgtcgtcgtcggtaccccgggtcgt
gtcatcgaccatctcgaaaagggcaccctggatctgaccaatctcaagtacctcgttctc
gacgaggccgacgagatgctcaagatggggttccaggaggacgtcgagcgcatcctccgc
gacacccccggcgacaagcaggtcgccctgttctccgcaacgatgcccggctcgattcgc
cggatctcgaagcagtacctgaacaatccggtcgagatcaccgtcaagtccaagacgtcg
accgcctcgaacatcacgcagcgctacattcaggttgctcatcagcgcaagctcgatgca
ctgacccgagtcctcgaggtcgaggcattcgaggcgatgatcatcttcgtccgtaccaag
caggccaccgaagacctggcggagaagctgcgcgcccgcgggcactcggctgccgcgatc
aacggtgacatcgtccaggcccagcgtgagcggaccatcggtcagctcaagaacggcgcc
ctcgacatcctcgtcgcgaccgacgttgctgctcgaggcctcgacgtggatcgaatctcc
cacgtcgtcaactacgacatccctcatgacacggagtcgtacgtccaccgcatcggtcgt
accggccgcgccggtcgtcagggtgacgcgttgctgttcgtcgccccgcgtgagcgtcat
ctgctcaagtccatcgagaaggcgacccgtcagccgcttgcggagatgcagcttcccagt
gtcgacgacgtcaacgcccagcgcgtggccaagttcggtgactccatcaccgagagcctg
gcctcggagaatctcgcgatgttccgcaagatgatcgaggactacgaccaggaacacgac
gtaccgctcatcgacatcgctgccgctctggcgttgcagtcgcgcgacggcgaagcattc
ttgctttctcccgagccgccggcaccgccgcgtcgtgagcgcgagcctcgtgaaccacgt
cctccccgtcgtttcgacgatggcccggccccgcgctcgcgtgggcccgagggccaggag
ctggccgcgtaccgcattgcagtcggcaagcgtcaccgcgtcgttccgggtgccatcgtc
ggtgccatcgccaacgagggtgggcttcgtcgaagcgacttcgggcacatcagcattcgc
ccggatcacagcatcgtcgagttgccggcagacctctccaacgagactctcgaagctttg
cgtcgcacacgcatctccggcgtcctgatccagctgcagcctgatttcgggccgccgcag
ggacgtccgagtggccgtggcgaccgtggtggccgggacgatcgtggtggacgtgacgac
cgccgcggtggcggacgcgatcgctacaacgactga
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