Rhodococcus qingshengii: C1M55_22450
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Entry
C1M55_22450 CDS
T05315
Name
(GenBank) Fpg/Nei family DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
rqi
Rhodococcus qingshengii
Pathway
rqi03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rqi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
C1M55_22450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rqi03400
]
C1M55_22450
Enzymes [BR:
rqi01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
C1M55_22450
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
C1M55_22450
DNA repair and recombination proteins [BR:
rqi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
C1M55_22450
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Ribosomal_S13
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
AUS33581
LinkDB
All DBs
Position
1:complement(4823471..4824337)
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AA seq
288 aa
AA seq
DB search
MPELPEVEALAGFLRQHAVGAVVGRVDIAALSVLKTFDPPITALQGRDVTGAARFGKHLA
LDCDGLWLVTHLSRAGWMRWLDNPSATPPKPGKGPLALRVHFFTPEGLTPAFDLTEAGTK
KRLAVWVVNDPQEVPGIARLGPDAMAVTEAEFAQILGGTSARIKNSIVEQSLIAGIGNAY
SDEILHTAKLSPFATSSRLTRDQISTLYAVMRSTLADAIERSEGQDAARLKGEKRSGMRV
HARTGLPCPVCGDVVREVSFAERSFQYCATCQTGGKPLADRRMSKLLK
NT seq
867 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaactacccgaggtggaagcgctggcagggttccttcgtcagcacgcggtcggc
gcagtggtgggacgcgtcgacatcgctgcattgagtgtgctcaagaccttcgatccgccg
atcactgctctgcaggggcgtgacgtcacgggcgccgcccgcttcgggaagcatctggct
ctggattgcgacgggttgtggttggtcacgcatctctcccgtgccggctggatgcgctgg
ctggacaatccatcggcgacgccgccgaagccggggaaggggccgttggcgctgcgcgtt
catttcttcacacccgaagggttgacgccggcattcgatctcaccgaagccggcaccaag
aaacgcctcgccgtctgggtcgtgaacgatccgcaggaggttccgggcatcgcccggttg
gggccggacgcgatggccgtgaccgaagccgagttcgcacagattctgggcggaacgtcg
gcgcggatcaagaactcgatagtcgagcagtcgttgatcgccggtatcgggaacgcctac
tcggacgagatcctccacaccgcgaaactctcgcctttcgcgacctcgtcgcggctgacg
cgggatcagatttcgacgttgtatgccgtgatgcgatctacgctggccgacgcgatcgag
cgttcggaaggtcaggacgcggcccggctcaaaggtgagaaacgctcggggatgcgagtg
catgctcgtaccggacttccgtgcccggtgtgcggtgacgtcgtacgcgaagtgtcgttc
gcggagcgctcttttcaatactgcgcgacgtgccagaccggcggtaaaccgttggcggac
aggcgaatgtcgaaactgctcaagtag
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