Rhodococcus qingshengii: C1M55_23385
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Entry
C1M55_23385 CDS
T05315
Name
(GenBank) helicase
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
rqi
Rhodococcus qingshengii
Pathway
rqi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rqi00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
C1M55_23385
09124 Replication and repair
03420 Nucleotide excision repair
C1M55_23385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rqi03021
]
C1M55_23385
03400 DNA repair and recombination proteins [BR:
rqi03400
]
C1M55_23385
Enzymes [BR:
rqi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C1M55_23385
Transcription machinery [BR:
rqi03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
C1M55_23385
DNA repair and recombination proteins [BR:
rqi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
C1M55_23385
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
DUF7108
Motif
Other DBs
NCBI-ProteinID:
AUS33748
LinkDB
All DBs
Position
1:5014251..5015909
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AA seq
552 aa
AA seq
DB search
MTDGPLIVQSDKTLLLEVDHERAGDARQAIAPFAELERAPEHVHTYRITPLALWNARAAG
HDAEQVVDALVSYSRFAVPQPLLVDIVDTMARYGRLQLVKSPVHGLILVSLDRAVLTEVM
RHKKISPMLGEKVDDDTVIVHPSERGRLKQMLLKVGWPAEDLAGYVDGEAHPIDLAFEEG
HWELRDYQQMAADSFWAGGSGVVVLPCGAGKTMVGAAAMAKAKATTLILVTNTVAGRQWK
RELIARTSLTEEEIGEYSGERKEIRPVTIATYQVITRRTKGEYKHLELFDSRDWGLVIYD
EVHLLPAPVFRMTADLQSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDIEAQGWI
APADCVEVRVTMTDAERMSYAVAEPEERYKLCSTAHTKIAVVKSILAKHPDSPTLVIGAY
LDQLDELGEALNAPVIKGSTKNKEREILFDQFRNGEIQTLVVSKVANFSIDLPEASVAVQ
VSGTFGSRQEEAQRLGRLLRPKHDGGQAHFYSVVSRDTLDAEYAAHRQRFLAEQGYAYRI
TDADDLLGPAIG
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgacggaccgttgatcgtccaatccgacaagacgctgctgttggaggtcgaccac
gagcgcgccggcgatgccaggcaggcaatcgcccccttcgcggaactcgaacgggccccc
gaacacgtccacacgtatcgcatcactcccctggccttgtggaatgcccgcgccgccgga
cacgacgccgagcaggttgtcgacgcgctcgtgtcgtactcacgattcgcggttccacaa
ccgctgctggtcgacatcgtcgacacgatggccaggtacggacgcttacagctggtcaag
agcccggtgcacggcctcatcctggtcagcctcgaccgcgcagtcctcaccgaggtgatg
cgacacaagaagatctcgccgatgctcggtgagaaggtcgacgacgacaccgtgatcgtc
cacccgagcgaacgcggccgcctcaagcagatgctgctcaaggtgggctggccggccgag
gacctcgccggctacgtggacggcgaagcgcacccgatcgatctcgctttcgaagagggc
cactgggaactgcgcgactaccagcagatggcagcggattcgttctgggccggcggctcg
ggcgtcgtcgtgctgccgtgtggcgccggcaagacgatggtgggcgccgcagcgatggca
aaggccaaggccaccaccctcatcctcgtcaccaataccgttgccggtcgtcagtggaag
cgtgagttgatcgcgcgtacatcgttgaccgaggaagaaatcggcgaatactccggcgag
cgcaaggagattcggccggtcacgatcgcgacctaccaggtgatcacacgtcgcacgaag
ggcgagtacaagcacctcgaacttttcgactcccgcgactggggactggtgatctacgac
gaggtccacttgctgcccgcgcctgtcttccggatgacggcagatctgcagtcgcgccgc
cgtctcggcctgaccgcaacgctggttcgtgaggacggccgcgaaggcgacgtcttctcg
ctcatcggccccaagcgctacgacgctccgtggaaggacatcgaagcgcagggctggatc
gcgccggccgactgcgtcgaggtgcgagtgacgatgacggacgccgagcgcatgtcctat
gccgtcgccgaaccggaggagcgctacaaactgtgctcgacggctcacacgaaaattgcg
gtcgtgaagtcgatcctggccaagcaccccgattctccgactttggtgatcggtgcgtat
ctcgatcagctcgacgaactcggcgaagccctgaacgccccggtgatcaagggatccacc
aagaacaaggaacgcgagatcctcttcgatcagttccgtaacggtgagatccagacgctg
gtggtgagtaaggtcgcgaacttctcgatcgaccttccggaggcgtctgtcgccgtgcag
gtttcgggaaccttcgggtcgagacaggaagaagcgcagcgactcggacgcctactgcga
cccaagcacgacggcggtcaggctcacttctattcggtggtctcgcgcgacactctcgat
gcggagtacgcggcacatcgtcagcgattcctcgccgaacagggctacgcctatcggatc
accgacgccgatgacctgctcggacctgccatcggctga
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