Rickettsia rickettsii Brazil: RPN_01355
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Entry
RPN_01355 CDS
T01737
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rrb
Rickettsia rickettsii Brazil
Pathway
rrb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rrb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RPN_01355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rrb03019
]
RPN_01355
03009 Ribosome biogenesis [BR:
rrb03009
]
RPN_01355
Enzymes [BR:
rrb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RPN_01355
Messenger RNA biogenesis [BR:
rrb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RPN_01355
Ribosome biogenesis [BR:
rrb03009
]
Prokaryotic type
rRNA helicases
RPN_01355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Flavi_DEAD
P-loop_SecA
ERCC3_RAD25_C
CMS1
UvrD-helicase
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AFB21820
LinkDB
All DBs
Position
225925..227157
Genome browser
AA seq
410 aa
AA seq
DB search
MKNFNLSEELIIALETMNITEPTEIQKQSIPVAMAGSDILASSQTGSGKTLAYLLPLIDS
FIKNKTTALILVPTRELATQIHSTLNKVTTSYKINSAVLIGGEPMPKQFMQLKKNPKVII
GTPGRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMKEQLEEINKFLPEKRQVLMFSATM
PKHIIAVSQKYLNNPVRITVGATNKAAAEIKQESMHVSDKEKFSALTKQLGHREGSVIIF
VKTKRSADQLAKMLKYENHTAEAIHGDLSQRQRERVILSFRKSNHRIMVATDVAARGLDI
PHTQHVINYDLPMCPEDYLHRIGRTGRAGATGHALSFISPDDVIRWRAIDRLVNKGESTP
RSEFRSDKNNRKRSFGKRAGGDGKKFNAFDSSRKRTFDGNSYGNKRKKVS
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaattttaatttatctgaagaattaattattgctctcgagacaatgaatataact
gagccgactgaaatacaaaagcaatcgattccggttgcaatggcgggatcggacatactc
gcttctagccaaacaggttcaggcaaaactcttgcttatttattgccgttaattgattca
tttattaaaaataaaactactgctttaattcttgttccgactagagaattagcaacgcaa
atacacagtactttaaataaagtaactacatcctataaaattaatagtgcagttttgata
ggcggtgaaccgatgcctaaacaatttatgcaattaaaaaagaatccaaaagtgattatc
ggtacgccggggcgtattatcgatcacttaaataggggaagtctaaaaattgatcgtata
ggcataaccgtacttgacgaaatggatagaatgcttgatatggggatgaaagaacaatta
gaagaaatcaataaatttttaccggaaaaaagacaagttttaatgttttctgctactatg
ccaaaacatattattgctgtttctcaaaaatatctaaacaatccggtacgtattacggta
ggtgctactaataaagcagctgcagaaataaaacaggaatcaatgcatgtttctgataaa
gaaaaatttagtgcattaactaaacaacttggtcatagggaaggatcggtcattattttt
gtgaagactaaacgctctgccgatcaattagctaaaatgttaaaatatgaaaatcataca
gcagaagctatacacggtgatttaagtcagcgtcaacgtgaaagagtaattttatcattt
cgtaagtcaaaccatagaataatggtagcaactgatgtagcggctcgtgggcttgatatt
cctcatacacagcatgtgattaattatgatttacctatgtgtcctgaagattatttacat
aggataggtagaacgggtagagcaggggctactggacatgcgttgtcttttatttctcct
gatgatgttattagatggcgtgcaatcgatcgtttagtaaataaaggagaatctacgcca
cgtagtgagtttagaagtgataaaaataatcgtaaaagatcattcggtaaaagagccggc
ggtgacggtaaaaagtttaatgcttttgatagtagccgtaaaagaacctttgatggtaac
agctacggtaataaaagaaagaaagtatcgtaa
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