Rubrobacter radiotolerans: RradSPS_1423
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Entry
RradSPS_1423 CDS
T03080
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
rrd
Rubrobacter radiotolerans
Pathway
rrd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rrd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RradSPS_1423
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rrd03019
]
RradSPS_1423
03016 Transfer RNA biogenesis [BR:
rrd03016
]
RradSPS_1423
Enzymes [BR:
rrd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
RradSPS_1423
Messenger RNA biogenesis [BR:
rrd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
RradSPS_1423
Transfer RNA biogenesis [BR:
rrd03016
]
Prokaryotic type
tRNA degradation factors
RradSPS_1423
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
S1_RRP5
PNPase
OB_RRP5_4th
KH-I_KHDC4-BBP
KH_PNO1_2nd
KH_2
KH_KhpA-B
Motif
Other DBs
NCBI-ProteinID:
AHY46706
UniProt:
A0A023X3E4
LinkDB
All DBs
Position
1494306..1496363
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AA seq
685 aa
AA seq
DB search
MRLEIPVGERQIVLETGKLARQAGGSVMVSFGDTTLLSAATRSNSPRPGVDFLPLSVDIE
ERMSAAGKIPGGFIKREGRPSERAILTARLTDRPLRPLFPKGYRNDIQVVSTVFVADQTN
PYDVVSMVGASAALALSDIPFDGPIGAVRVGRDPDGGLILNPSYMEISEGDLDLVVAGTK
DAITMVEAGANEVSEDVMVEALLAAHEAIKVQAEAIEKWAAEHGKPKQEVAAPEENPLLS
ELRAQYYDRVKDGLINESRTERHQEINDLREAALEGKEDEEEISRIKDAFRTLEKEAFRD
LYVNDRKRTDLRGLTEIRPVTAEVSVLPRVHGTGLFTRGETQVLSSLALADLGLAQRLDT
LEPQTTKRYMHHYNFPPYSTGETGRIGSPRRREIGHGALAERALVPVLPDEETFPYALRI
ISDVLESNGSSSMASVCGSTLSLMDGGVPIKAPVAGVAMGLVKEGEDYVILTDIQGLEDH
LGDMDFKVAGTRDGITALQMDMKITGVSAELLKEALGQAREARNEILDIMRETISEPRLE
TSDYAPRVEAIRIPTDKIGMIIGPGGKTINGMQDQFGVNISVEDDGTVYVSGLDGISVKN
ALGAIGAMTKDVEAGEIYTGKVVKTTNFGAFVELLPGKDGLIHISRLAPGRVESVEDVVT
QGDTVKVRVLEIDKQKRISLEKLED
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atgcgactagagatcccagtcggcgagcggcagatcgtgctcgaaaccgggaagctcgcc
aggcaggccggcggttccgtcatggtctcgttcggcgacacgaccctgctctctgcggcg
acgcgctcgaactcgccgcggccaggggtggactttttgcccctcagcgtggacatcgag
gagaggatgagcgcggcggggaagatcccgggcggctttataaagcgcgagggccgtccg
tcggagcgggcgatcctcacggcgcgcctgacggaccggcccctgaggccgctcttcccg
aagggctaccgcaacgacatccaggtcgtgagcaccgtctttgttgccgaccagaccaac
ccgtacgacgtggtgagcatggtcggggcctcggcggcgctcgcgctctcggacatcccg
ttcgacgggcctatcggcgcggtgcgcgtcgggcgtgacccggacgggggcttgatcctc
aacccgtcctacatggagatctccgagggcgacctcgaccttgttgttgcgggtacgaag
gacgcgatcacgatggtcgaggccggggcgaacgaggtgagcgaggacgtgatggtcgag
gcgctgctcgcggcgcacgaggctatcaaggtccaggccgaggcgatagagaagtgggcg
gccgagcatggcaagccgaagcaggaagtcgccgcgccggaggagaacccgcttctttcg
gagcttcgggcgcagtactacgaccgggtgaaggacggcctcataaacgagagccgcacc
gagcgtcaccaggagataaacgacctccgggaggccgcgcttgagggcaaggaggacgag
gaggagatctcccggatcaaggacgccttccggacgcttgagaaggaggcgttccgcgac
ctctacgtaaacgaccgcaagcgcaccgaccttcgggggcttacggagatccggccggtc
acggcggaggtctcggtgctgccgcgggtacacgggacggggctcttcacgcgcggggag
acgcaggttctctcctcgctcgcgctcgccgacctcgggctcgcccagaggctcgacacc
cttgagccgcagacgaccaagcgctacatgcaccactacaacttcccgccgtactcgacg
ggggagaccgggcgtatcggaagtccccgcaggcgggagatcggccacggagcgcttgcc
gagcgggcgctcgtgccggtgcttccggacgaggagacgttcccgtatgcgcttcgcatc
atctcggacgtgcttgagtccaacggctcgtcctcgatggcgagcgtgtgcggctccacg
ctttcgctgatggacggcggcgttccgataaaggcgccggtcgcaggggttgcgatgggt
ctcgtcaaggagggcgaggactacgttatcctcaccgacatccagggcctcgaagaccat
ttgggcgatatggacttcaaggtcgcgggcacgcgcgacggcatcacggcgcttcagatg
gacatgaagatcacgggcgtctcggcggagcttctgaaggaggccctcgggcaggcccgg
gaggctcggaacgagatcctcgacatcatgcgcgagacgatctccgagccgcgtcttgag
acctcggactatgcgccgcgggtcgaggcgatccggataccgacggacaagatcggcatg
ataatcggccccggcggcaagaccatcaacgggatgcaggaccagttcggggtgaacatc
tcggtcgaggacgacggtacggtctacgtctccgggctcgacggcatcagcgtcaagaac
gcgctcggggccatcggggcgatgacaaaggacgtcgaggccggggagatctacaccggc
aaggtcgtcaagacaacgaacttcggggcctttgtcgagcttcttccgggcaaggacggg
ctgatccacataagccgcctcgctccgggacgggtcgagagcgtggaggacgtcgttacg
cagggcgacacggtgaaggtccgggtgcttgagatagacaagcagaagcggatctcgctg
gagaagctggaggactag
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