Rubrobacter radiotolerans: RradSPS_1425
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Entry
RradSPS_1425 CDS
T03080
Name
(GenBank) putative hydrolase of the metallo-beta-lactamase superfamily
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
rrd
Rubrobacter radiotolerans
Pathway
rrd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rrd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RradSPS_1425
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rrd03019
]
RradSPS_1425
Messenger RNA biogenesis [BR:
rrd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RradSPS_1425
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
AHY46708
UniProt:
A0A023X2Z4
LinkDB
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Position
1497754..1499415
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AA seq
553 aa
AA seq
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MSDKNALQVVPLGGLGEIGKNMTAVRGSGGIVLVDAGMSFPDEEMPGIDLVLPDFTYLRE
NAGELRGILLTHGHEDHVGAIPYVLREFNIPVYGTRITLGLVRSKLQEFGIKNADLREVV
DGQRVRVGGINAEFIHVNHSIPGATAIALRTNAGLIVFSGDYKIDFTPIEGPPMDLGRFA
ELGKEGVLAYFGDSTNSERPGYVPSERTVAATLGKVFEEAQGRIIVASFASHLHRVAQVV
ETAKKHNRLVGLTGRSMVRNVGIARELGYLDIPDQMLVDQKDFSRIPDKDIVILTTGSQG
EPLAGLSRIAAGTHRSVEVGEGDTVVIAAHPIPGNEPGVSRTINGLMQRGAEVLYSPLQR
VHVSGHAAQEEQKLVLALLKPRYLVPVHGEYRMLKHHAQTAMSMGIPESNIFILENGSRL
EFRDGNAKRLKSVSAGMFLVDGGGLADTSESVMRDRQQLSGDGMFIVVAKINSKTGELLG
PPDVMSRGFMDQQTQNGTVEGSVEVVTKTLERTAKRNITDWSQLKTEIRRDLSTYLSQKT
RKRPMILPLIVEV
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
ttgtcagacaaaaacgccttgcaggtcgtacccctggggggactcggggagatcggcaag
aacatgaccgccgtgcgcgggtccggggggatagtccttgtagatgcggggatgtcgttc
ccggatgaggagatgccgggcatcgacctcgtcctgccggacttcacgtaccttcgggag
aacgcgggcgagcttcgcggcatcctgctcacgcacggccacgaggaccacgtaggggcc
atcccgtacgttctccgggagttcaatatcccggtctacgggacgaggatcacgctcggc
ctcgtgaggagcaagctgcaggagttcgggataaagaacgccgacctccgggaggtcgtc
gacggacagagggtgcgcgtcggcgggataaacgcggagttcatacacgtcaaccactcc
atacccggagccacggcgatcgccctgcgcacgaacgcgggcctcatcgtcttctccggc
gactacaaaatagactttaccccgatcgaaggccccccgatggacctcgggcgcttcgcg
gagctcggcaaggagggcgtcctcgcctactttggagactcgacgaacagcgagcgtccg
ggctacgtcccctcggagcggaccgtcgctgcgacgctcggcaaggtcttcgaggaggcg
cagggccggatcatcgtcgcctcgttcgcctcgcacctgcaccgggtcgctcaggtcgtc
gagacagcgaagaagcacaaccgccttgtcggcctgacgggccgctcgatggtccggaac
gttggcatcgcgcgcgagctcggctacctggatatcccggatcagatgctcgtggaccag
aaggacttctcgcgtatcccggacaaggacatcgtgatcctgacgacgggctctcagggc
gagccgctcgccggtctctcgcgtatcgccgcgggtacgcaccgttcggtcgaggttggg
gaaggcgacacggtcgttatcgccgctcacccgataccgggcaacgagccgggggtctcg
cggaccatcaacggcctcatgcagcgcggggcggaggtcctctacagcccgctgcagcgg
gtccacgtctcggggcacgccgcgcaggaggagcagaagctcgtgctcgcgcttctcaag
ccgcgctacctcgtcccggtgcacggggagtaccggatgctcaagcaccacgcccagacg
gcgatgagcatgggcatcccggagagcaacatctttatccttgagaacggaagccgcctc
gagttccgcgacggaaacgccaagcgcctgaagagcgtttcggccggtatgttcctcgtc
gacggcggcggcctcgccgacacttcggagtcggtgatgcgcgaccggcagcagctctcc
ggcgacggtatgttcatcgtcgtggcgaagatcaactcaaagaccggcgaactcctcgga
ccgccggacgtgatgagccgcggctttatggaccagcagacccagaacggcaccgtcgaa
ggctcggtcgaggtcgtaacaaagacgctcgaacgcaccgccaagcgcaacatcaccgac
tggagccagctgaagaccgagatccggcgcgacctctcgacctatctctcgcagaagacg
cgcaagcggcccatgatacttcctctaatagtagaggtctaa
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