Rubrobacter radiotolerans: RradSPS_1949
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Entry
RradSPS_1949 CDS
T03080
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rrd
Rubrobacter radiotolerans
Pathway
rrd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rrd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RradSPS_1949
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rrd03021
]
RradSPS_1949
03400 DNA repair and recombination proteins [BR:
rrd03400
]
RradSPS_1949
Enzymes [BR:
rrd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RradSPS_1949
Transcription machinery [BR:
rrd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RradSPS_1949
DNA repair and recombination proteins [BR:
rrd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RradSPS_1949
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AHY47232
UniProt:
A0A023X435
LinkDB
All DBs
Position
complement(2027557..2031426)
Genome browser
AA seq
1289 aa
AA seq
DB search
MQGLERDIDINKLDKISIGLASAEEVREWSRGEVTKPETINYRTLRPEKDGLFCERIFGP
SKDWECYCGKYKRIRFKGIICERCGVEVTRARVRRDRMGHIELAAPIAHVWFVKGVPSRM
GYLLDISPKDLDRVLYFASSIVTWVDREARANDIDSLRQQVEEEIEQLGIDRDEEIEAMK
ALHAKRVSVIRGESSADEFTEEFAEIEDEDREAALKRVNKEYEDNIADIGRSMDEQIELT
RRAWEEFQTLEPRQIVDDEELFREMKDRFGDEYGYGVYFRGGMGAESVRDLIQQVDLKEE
AEELREVIGESKGQKRQKAIKRLKVVDAFASSGNDPAWMIMDAIPVLPPDLRPMVQLDGG
RFATSDLNDLYRRVINRNNRLRRLLDLGAPDVIVNNEKRMLQEAVDALFDNGRRGRAVTG
AGNRALKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPGLKMHQCGLPRLMAVELFK
PFVMKVLVDRALAPNIRSAKQMVERLRPEVWDVLEDVIKEHPVLLNRAPTLHRLGIQAFE
PVLVEGKAIQVHPLVCAAFNADFDGDQMAVHVPLSPEAQAEARILMLSTQNILKPADGLP
VATPSQDMVLGLYYITLGVEGFEEMEPKAFISSYDEAEAAYKEGSLKLHDKVITRRGGER
LVTTLGRILFNENIEQTLRDYLGDAYDPESYEYVNWTLKKGDIKDLVQVYVNRYPTELVS
QLLDTLKRVGFTTATRAGISVGKNDIVVPEQKDEIMARYEGLVDEVEDQWDQGFISDEER
QERVITLWTQAKNEIEAAMTANLWAMNPIYMMATSGARGNSSNFTQLAGMRGLMTNTKGE
IMDEPVKSNFIEGLSVLEYFTSTHGARKGQADTALRTADSGYLTRRLVDVSQDVVVQGDD
CGTEGYMEIPFDADTMEQSLATRYLARDLVNPETGEVIVEAGENLTHDLLRSIKEGIPAG
TPVPVRSPARCENAHGVCQKCYGHALSSYRPVDIGEAVGIIAAQSIGEPGTQLTMRTFHT
GGVAGDDITAGLPRVVELFEARHPKGEAVISEIDGIVHFEDDESDRMVRVIVSGDGGEER
EYRVERQALWEEIVDGASITANTRITEGSLYPHEILENDLRYGRGTGMTERYIVDEVQNV
YRTQGVDIHDKHVEVIVRQMLRKVIVDAPGDTDFLPEQVADRFTVLAANREVEENGGEPA
TFHTVLMGITKASLATESFLSAASFQETARVLTDAAIEGKVDDLAGLKENVIIGKLIPAA
TGLPKYRRLTATIAGYNARESDELDIAAS
NT seq
3870 nt
NT seq
+upstream
nt +downstream
nt
ttgcagggtctagagcgcgacatagacataaacaagctggacaagatctccatcggcctt
gcctcggccgaggaggtccgggagtggtctcgcggcgaggttacgaagcccgagacgatc
aactaccgcactctgcgtccggagaaggacggcctgttctgcgagaggatcttcggtccc
tcaaaggactgggagtgctactgcggcaagtacaagcgcatccgcttcaagggcattatc
tgcgagcgctgcggcgtcgaggttacccgcgcccgggtgcgtcgcgaccggatgggccac
atagagctcgccgcgccgatagcgcacgtctggttcgtgaagggcgttccgagccggatg
ggctacctgctcgacatcagcccgaaggacctcgaccgggttctgtactttgcgtcgtcg
atcgttacgtgggtcgaccgtgaggcgcgagcgaacgacatagattcgctcaggcagcag
gtcgaggaggagatcgagcagctcggcatcgaccgggacgaggagatcgaggcgatgaag
gcgcttcacgcaaagcgcgtgagcgttatccggggtgagtcctctgcggacgagttcacg
gaggagttcgccgagatcgaggacgaggaccgcgaggccgccctcaagcgcgtgaacaag
gagtacgaggacaacatcgccgacatcggtcgttcgatggacgagcagatcgagctgacg
cggcgggcctgggaggagttccagacccttgagccgcgccagatcgtcgacgacgaggag
ctcttccgcgagatgaaggaccgcttcggtgacgagtacggctacggcgtgtacttccgc
ggcggcatgggcgccgagtcggtgcgggacctgatacagcaggtcgacctcaaggaggag
gccgaggagcttcgcgaggttatcggcgagtcgaagggccagaagcgtcagaaggcaata
aagcgcctgaaggtcgttgacgccttcgcctccagcgggaacgatccggcgtggatgatc
atggacgctatcccggtccttccgccggacctcaggccgatggttcagctcgacggcggt
cgcttcgcgacctcggacctgaacgacctctaccgcagggtcataaaccggaacaaccgc
ctcaggcggctgctcgacctcggggccccggacgtgatcgtcaacaacgagaagcgtatg
ctccaggaggccgtggacgcgctcttcgacaacggacgtcgggggcgggccgtcacgggc
gcgggcaaccgggctctcaagtcgctctcggacatgctcaagggcaagcagggccgcttc
cggcagaaccttctcggcaagcgcgtggactactcgggacggtcggtcatcgtggtcggc
ccggggctgaagatgcaccagtgcggcctgccgcgccttatggcggtcgagctgttcaag
ccgttcgtgatgaaggtgctcgtcgaccgggcgctcgcgccgaacatccggagcgcgaag
cagatggtcgagcggctccggcccgaggtctgggacgttctggaggacgtcataaaggag
cacccggtgctcttgaaccgggctccgacgctccaccgcctcggcatccaggctttcgag
ccggtccttgtcgaggggaaggccatacaggtccacccgctcgtgtgcgcggcgttcaac
gccgacttcgacggcgaccagatggccgttcacgtgccgctctcgccggaggcccaggcc
gaggcgcgcatcctgatgctctcgacgcagaacatcctgaagcccgccgacgggctcccg
gtggcgacgccgtcccaggacatggtcctcgggctgtactacatcacgctcggggtcgag
ggcttcgaggagatggagccgaaggcgtttatatcgagctacgacgaggccgaggccgcc
tacaaggagggctcgctcaagctgcacgataaggtgatcacccgccgcggcggcgagagg
ctcgtaacgactttggggcgcatcctgttcaacgagaacatcgagcagaccctccgggac
tacctcggcgacgcctacgaccccgagagctacgagtacgttaactggacgctcaagaag
ggcgacataaaggaccttgtccaggtctacgtgaaccgctacccgaccgagctcgtcagc
cagcttctcgacacgctcaagcgcgtcgggttcacgacggccacaagggccggcatctcc
gtcggcaagaacgacatcgtcgtgccggagcagaaggacgagatcatggcccgctacgag
gggctcgtggacgaggtcgaggaccagtgggatcagggctttatctccgatgaggagcgt
caggagcgcgtcataacgctctggacgcaggccaagaacgagatcgaggccgccatgacg
gcgaacctctgggcgatgaacccgatctacatgatggcgacctcaggagcccggggtaac
tcctcgaacttcactcagctcgccggtatgcgcggcctgatgacgaacaccaagggcgag
atcatggacgagcctgtcaagagcaactttatcgaggggctctccgtccttgagtacttc
acctcgacgcacggcgctcgaaaggggcaggccgatacggcgcttcgcacggccgactct
ggctacctgacccgccgcctcgtggacgtctcgcaggacgtggtcgtgcagggcgacgac
tgcggcaccgagggctacatggagatcccgttcgatgcggacacgatggagcagtcgctc
gcgactcgctacctcgcccgcgacctcgtgaacccggagacgggcgaggtcatcgtcgag
gcgggggagaacctgacgcacgacctgctccgctcgataaaggaaggcatcccggccggc
accccggtcccggtccgcagccccgcgcgctgcgagaacgcccacggcgtctgccagaag
tgctacgggcacgcgctctcctcgtaccgacccgtcgacatcggcgaggcggtcggcatc
atcgccgcgcagtcgatcggcgagccggggacgcagctcacgatgcgcaccttccacacc
ggcggcgtcgccggggacgacataacggccggtcttccgcgggtcgtcgagctcttcgag
gcccggcacccgaagggcgaggcggttatctccgagatcgacggcatcgtccacttcgag
gacgacgagtccgaccggatggttcgggtgatcgtctcgggcgacggcggcgaggagcgc
gagtaccgcgtcgagcggcaggcgctctgggaggagatcgtcgacggagcctccataacg
gcgaacacgcgcatcaccgagggctcgctctacccgcacgagatccttgagaacgacctt
cgctacggacggggcaccgggatgaccgagcgctacatcgtcgatgaggtccagaacgtc
taccggacgcagggcgtcgacatccacgacaagcacgtcgaggtgatcgtccgccagatg
ctccgcaaggtcatcgtggacgcgccgggcgatacggacttcctgcccgagcaggtcgcc
gacaggttcaccgtccttgccgccaaccgcgaggtcgaggagaacggcggcgagcccgcg
acgttccacacggtccttatgggtataacgaaggcttcgctcgcaacggagagcttcctt
tcggcggcctccttccaggagacggcgcgcgtccttaccgacgcggccatcgagggcaag
gtggacgacctcgccgggcttaaggagaacgtcattatcggcaagctcatcccggccgcg
acgggcctcccgaagtaccggaggcttaccgcgacgatcgcgggctacaacgcccgggag
tcggacgagctggacatagcggcctcctag
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integrated database retrieval system
