Rhodospirillum rubrum F11: F11_00055
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Entry
F11_00055 CDS
T02006
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
rrf
Rhodospirillum rubrum F11
Pathway
rrf02020
Two-component system
rrf02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
rrf00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
F11_00055
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
F11_00055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rrf03021
]
F11_00055
Transcription machinery [BR:
rrf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
F11_00055
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
Crp
GCP_C_terminal
Motif
Other DBs
NCBI-ProteinID:
AEO46482
LinkDB
All DBs
Position
complement(10527..12029)
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AA seq
500 aa
AA seq
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MVMSPRLDLRQTQSLVMTPQLQQAIKLLQLSNMELSVYVDQELERNPLLERDDSADVSPE
PDRREERADSAETQVLDVVPGNTTDAPLDQDFNTAAEEGTPSDSWAEAGGGFDAGTPWGS
GTSGSFDDSDGGLEQMVAGPRSLRDHLSDQITLDLKTSADRLIAHHLMGMLDDAGYLIGA
LDEVADSLGCSLAEVERVLGRLQAMDPPGLFARSLKECLAIQLADLNRLDPAMQALLDHL
EMLGRRDIAGLLKICGVDHEDMMGMIAEIRALDPKPALRFENTLTQPVIPDVLMRPDPAG
GWLVELNSETLPRVLINNRYHARLSRSGDKETRTFLSENLATANWLVKSLDQRANTILKV
ATELVRQQDAFFLHGVRHLRPLILRDIAEAIEMHESTVSRVTSNKYIASPRGIFELKYFF
TQAIGAADGGESHSAEAVRDRIRSLIEAESPDQVLSDDKLVDILRTDGIDIARRTVAKYR
EGMRIASSVRRKKEKSGRLP
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
atggtgatgtcgccccgtctggatcttcgccagactcagtctctggtcatgacaccccaa
ctgcagcaggcgatcaagctgctgcagctgtccaatatggagctctcggtctacgtcgat
caggaactcgagcgcaatccgctgctcgagcgcgacgactcggccgacgtcagccccgag
cccgaccgccgcgaggaacgcgccgacagcgccgagacccaggtgctcgatgtcgtgccc
ggcaataccaccgacgcgccgctcgaccaggatttcaacaccgccgccgaggaggggacg
ccgtccgacagctgggccgaagctggcggcggctttgacgccggcaccccctggggctcg
ggaaccagcggctcgttcgatgacagcgacggcggactggaacagatggtcgccgggccg
cggtccttgcgcgaccacctgagcgaccagatcacccttgatctcaagacctcggccgac
cggctgatcgcccaccatctgatgggcatgcttgatgacgccggctatctgatcggcgcc
ctcgacgaggtggccgacagcctggggtgctccttggccgaggttgaacgggtgctgggc
cgccttcaggcgatggacccgcccggcctcttcgcccgctcgctcaaggaatgcctggcg
atccaactggccgacctcaaccgactcgacccggcgatgcaggcgctgcttgaccatctc
gagatgctcgggcggcgcgatatcgccggtctgctcaagatttgcggagtcgatcacgag
gatatgatggggatgatcgccgagatccgggcgcttgatcccaagccggcgctgcgcttt
gaaaacaccctgacccagccggtgatccccgatgtgctgatgcgccccgatccggcgggg
ggctggctggtcgaactcaacagcgaaaccctgccccgcgtgctgatcaacaaccgctat
cacgcccggttgagccgcagcggcgacaaggaaacccgaacgttcttgtcggagaatctg
gccaccgccaattggctggtgaaatccctcgaccagcgggccaataccatcttgaaggtg
gcgaccgaactggtccgccagcaggacgccttcttcctgcatggcgttcgtcacctgcgg
ccgctgatcctgcgcgacatcgccgaggcgatcgaaatgcacgaaagcacggtcagccgg
gtgaccagtaataaatacatcgctagcccgcgcggtattttcgagctcaagtatttcttc
acccaggcgatcggcgccgccgacggcggagaaagccattcggcggaagcggtgcgcgat
cgcattcgctctctgattgaagctgagagccccgatcaggtattgtccgacgacaaactc
gtcgatatcctgcgcaccgacggcatcgacatcgcccggcgaacggtggctaaatatcgg
gaaggaatgcggatcgcctcgtcggtgcgccgcaaaaaggaaaaatcggggcgcctacct
tga
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