Rhodospirillum rubrum F11: F11_00080
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Entry
F11_00080 CDS
T02006
Name
(GenBank) 3'-5' exonuclease
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
rrf
Rhodospirillum rubrum F11
Brite
KEGG Orthology (KO) [BR:
rrf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rrf03016
]
F11_00080
Enzymes [BR:
rrf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
F11_00080
Transfer RNA biogenesis [BR:
rrf03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
F11_00080
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNase_H_2
Motif
Other DBs
NCBI-ProteinID:
AEO46487
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All DBs
Position
complement(16232..16852)
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AA seq
206 aa
AA seq
DB search
MTIAPTIHYHRGDLPSGLTFPQGIAVDTETMGLNPHRDRLCVVQLSGGDNIAHVVHLNRD
LQAPVLASLLGDPSVLKIMHFGRFDIASIHHGLGVLCEPVYCTKIASKLCRTNTDSHGLK
ALCKDLLGVDLSKHQQTSDWGAESLSPEQLTYAASDVLYLHALKARLDGLLAREGRTTLA
EGCFRFLPTRALLDLAGWEEPDIFSH
NT seq
621 nt
NT seq
+upstream
nt +downstream
nt
atgaccatcgcaccgaccatccattaccaccgcggcgacctgcccagcggtctgaccttc
ccccagggcatcgccgtcgataccgagaccatggggctgaacccccatcgcgatcgcctg
tgcgtcgtccagctttcgggcggcgacaacatcgcccatgtcgtccatctgaaccgcgac
ctgcaggccccggtgctggcgtcgttgcttggcgatccctcggtgctgaagatcatgcat
ttcggccgcttcgacatcgcctcgatccaccacggcctgggcgtgctgtgcgagccggtc
tattgcacgaagatcgccagcaagctgtgccgcaccaatacggatagccacgggctgaag
gccttgtgcaaggacctgctgggcgtcgatctgtccaagcatcagcaaaccagcgactgg
ggcgccgaaagcctgagccccgagcagttgacctatgccgccagcgatgtcttgtacctg
cacgcgctgaaggcccgcctggatggcctgctcgcccgcgaaggccgcacgaccctggcc
gaaggctgcttccgcttcctgcccacccgcgccctgctcgatctggccggctgggaagag
cccgatatcttcagtcattga
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