Rhodospirillum rubrum F11: F11_00450
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Entry
F11_00450 CDS
T02006
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
rrf
Rhodospirillum rubrum F11
Pathway
rrf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rrf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F11_00450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rrf03019
]
F11_00450
03400 DNA repair and recombination proteins [BR:
rrf03400
]
F11_00450
Enzymes [BR:
rrf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
F11_00450
Messenger RNA biogenesis [BR:
rrf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
F11_00450
DNA repair and recombination proteins [BR:
rrf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
F11_00450
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
RecQ_Zn_bind
Helicase_C
ResIII
TRAFD1-XIAF1_ZnF
Motif
Other DBs
NCBI-ProteinID:
AEO46561
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All DBs
Position
102748..104541
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AA seq
597 aa
AA seq
DB search
MLLADIWGFKDFRPGQEAIIRAVLGGEDVLAVMPTGSGKSLCYQLPALMRQGVTLVVSPL
IALMRDQVAQLDALGVAAGALNSSIDMDGYRRVMDGLRGGRLKLLYVAPERLARPDTLSL
LRDSGVTALAIDEAHCVSQWGHDFRPDYLCLGKVREDLGGVQTVAFTATADAATRDDIAG
RLFPAPPRLFIGGFDRPNLRLAMRPKGDTRRRMFEFVAAHTGESGVIYCGSRARTEELAE
GLRGAGHRALPYHAGLDKPVRDANQDAFLAEDGLVMVATVAFGMGIDKPDVRFVCHADMP
RSIEAYYQEIGRAGRDGLAADTLTFYGLDDVRLHRMRIEESQAGDEQKRVEIQRLNALLA
LCEAPRCRRQTLLGYFGERTEPCGNCDLCINGVESFDGTIEAQKAMSAMLRTGQRFATEH
LINILVGTQTDAITQYGHDKLPTFGVGKDHTRNVWRSIFRQISAGGLISLDIANHGRWLM
TEAGRAVLRGQAGVALRSDVLEAAGRGERKDKERRASAPAVQLEADDRALFDALRAKRQE
LARAENVPAYVVFADRTLIELATKRPPSLDAMREIHGIGQSKLARYGAAFLEVITAG
NT seq
1794 nt
NT seq
+upstream
nt +downstream
nt
gtgttgttggctgatatctggggattcaaggatttccgccccggtcaggaagcgatcatc
cgcgccgtgctgggcggcgaggacgtgctggcggtcatgccgaccgggtcgggcaaatcg
ctgtgctaccaactgccggcgctgatgcgccagggggtgaccctggtcgtctcgccgctg
atcgccctgatgcgcgatcaggtggcccagcttgacgccctgggggtggccgccggggcg
ctgaattcctcgatcgacatggacggctatcgccgcgtgatggatgggttgcgcggcggc
cgtctcaagctgctctacgtcgcccccgaacggctggcccgccccgataccctgtccctg
ctgcgcgacagcggggtgacggccctagccatcgacgaggcccattgcgtcagccaatgg
ggccacgacttccgccccgactacctgtgtctgggcaaggtgcgcgaggatctgggcggg
gtgcagacggtggccttcaccgccaccgccgatgccgccacccgcgatgatatcgccgga
cggctgttcccggcgccgccgcgcctgttcatcggcggcttcgatcgccccaacctgcgc
cttgccatgcggcccaagggcgacacccggcggcggatgttcgagttcgtcgccgcccat
acgggcgaaagcggcgtgatctattgcggcagccgggcgcgcaccgaggaattggccgag
ggcctgcgcggcgccggccaccgggccttgccctatcacgccggcctcgacaagccggtg
cgcgacgccaatcaggatgccttcctggccgaggacgggctggtgatggtcgccaccgtc
gcctttggcatgggcatcgacaagcccgatgtccgcttcgtctgccatgccgatatgccg
cgctcgatcgaggcctattatcaggagatcggccgcgccggccgcgatggtctggccgcc
gataccctgaccttctatggcctggacgatgtccgcctgcaccgcatgcgcatcgaggaa
agtcaggccggcgacgagcaaaagcgcgtcgagatccagcggctgaacgccctgctggcg
ctgtgcgaagcgccgcgctgccggcgccagaccctgctcggctatttcggcgaacgcacc
gagccgtgcggcaattgcgatctatgcatcaatggcgtggaaagcttcgacggcaccatc
gaggcccagaaggcgatgtcggcgatgctgcgcaccggccagcgcttcgccaccgagcat
ctgatcaatatcctggtcggcacccagaccgacgccatcacccagtacggtcacgataaa
ttgccgaccttcggcgtgggcaaggatcacacgcgcaatgtctggcgctcgatcttccgc
cagatcagcgccggcggcctgatcagcctggatatcgccaatcatggccgctggctgatg
accgaggccggccgcgcggtgctgcgcggacaggcgggcgtcgcgctgcgctccgatgtg
ctcgaagccgccggccgcggcgagcgcaaggacaaggagcgccgggccagtgctccggcc
gtccagctcgaggccgacgatcgcgccctgttcgacgccctgcgcgccaagcgccaggag
ctggcgcgggccgaaaacgtgccggcctatgtggtcttcgccgatcgcaccctgatcgaa
ctggcgaccaaacgcccgcccagccttgacgccatgcgcgagatccacggcatcggccaa
agcaagctcgcccgctacggcgcggccttcctcgaggtgatcaccgccggctga
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