Rhodospirillum rubrum F11: F11_05840
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Entry
F11_05840 CDS
T02006
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
rrf
Rhodospirillum rubrum F11
Pathway
rrf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rrf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
F11_05840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rrf03400
]
F11_05840
DNA repair and recombination proteins [BR:
rrf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
F11_05840
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
F11_05840
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
Helicase_C
UvrB
ResIII
DEAD
UVR
AAA_30
P-loop_SecA
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AEO47638
LinkDB
All DBs
Position
complement(1335113..1337251)
Genome browser
AA seq
712 aa
AA seq
DB search
MLLPLFERPPAGPRAEFRLASDYQPAGDQPQAIAELLRGLAAQDRDQVLLGVTGSGKTFT
MAQVIAEMGRPTLILAPNKTLAAQLYGEFKNFFPDNAVEYFVSYYDYYQPEAYVPRTDTY
IEKDSSINEQIDRMRHAATRALLERRDVIIVASVSCIYGIGSVESYSRMIIPIKVGTTLP
RADLLKALVELQFTRNDIAFTRGMFRVRGDSVEIFPAHYEDRAWRVSLWGDEIESVREFD
PLTGEITASLDEVTVYPASHHVTPRPALSQAVRTIKAELKETLARFYDQGKVLEAQRLEQ
RTTFDLEMIEATGHCKSIENYSRHLTGRRPGDPPPTLFEYLPEDALLFVDESHVAVPQIG
GMFRGDFNRKSVLAEFGFRLPSCVDNRPLKFEEWDVMRPPSIFVSATPGRWELERTGGVV
AEQVIRPTGLVDPVCIIRPVEAQVDDLLGEVKACAARGERVLVTTLTKRMSEDLTEYLTE
QGVRVRYMHSDIETLERIEIIRDLRLGAFDVLVGINLLREGLDIPECALVAILDADKEGF
LRSRTSLIQTIGRAARNVGGRVILYADKMTDSLTFAIEETSRRRQRQQDYNAAHGITPET
VRSRISDVLSSVYEKDYVTVTTGVSGDNQLVGKSLREHLADLDKRMRAAAADLEFEEAGR
LRDEIRRLEALDLGLPGDAGATGLAEAAIPLRAAVAKGRGAAAKGRGRKGKR
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
atgcttctccccctgttcgagcgcccgcccgctggcccccgcgccgagtttcgtctggcc
agcgactatcagcccgccggcgatcagccccaggccatcgccgagctgttgcggggtctg
gccgcccaagaccgcgatcaggtgctgctgggcgtcaccggctcgggcaagaccttcacc
atggcccaggtcatcgccgagatgggccggccgaccctgatcctcgcccccaacaaaacc
ctggccgcccagctttacggcgagttcaagaatttctttcccgacaacgccgtcgagtat
ttcgtcagctattacgactattaccagcccgaagcctatgttccgcgcaccgatacctat
atcgaaaaagactccagcatcaacgagcagattgaccggatgcgccacgccgccacccgc
gccctgcttgaacgccgcgatgtcatcatcgtcgcctcggtctcgtgcatctatggtatc
ggctcggtcgagtcctattcccggatgatcatccccatcaaggtgggaacgacgctgccg
cgcgccgatctgctcaaggcgctggtcgagctgcagttcacccgcaatgacatcgccttc
acccggggtatgttccgggtgcgcggggattcggtggagatcttccccgcccactatgag
gaccgcgcctggcgggtcagcctgtggggggacgagatcgaatccgtgcgcgaattcgat
cccttgaccggcgagatcaccgccagcctcgacgaagtcaccgtctatccggccagccac
catgtcaccccccgcccggcgctgtcccaggcggtgcgcacgatcaaggccgagctcaag
gaaacgctcgcccgcttttacgaccagggcaaggtgcttgaggcccagcgcctggagcag
cgcaccaccttcgatctggagatgatcgaggcgaccggccactgcaagtccatcgagaac
tactcacgccatctgaccggacgccgccccggcgatccgccgccgaccctgttcgaatac
ctgcccgaggacgccttgctgttcgtcgatgaaagccacgtcgccgtgccgcagatcggc
ggcatgttccgcggcgacttcaatcgcaaaagcgtgctggcggaattcggcttccgcctg
ccgtcctgcgttgataaccggccgctgaagttcgaggaatgggacgtcatgcgcccgccg
tcgatcttcgtttcggccaccccggggcgctgggaacttgaacgcaccggcggcgtcgtc
gccgaacaggtgatccgccccaccggtctggtcgatccggtctgcatcatccgcccggtc
gaggcccaggtcgacgatctgctgggcgaggtcaaggcctgcgcggcgcgcggcgaacgg
gtgctggtcaccaccttgaccaagcgcatgtccgaggatctgaccgaatatctgaccgaa
cagggggtaagggtgcgctacatgcactccgacatcgaaaccctggagcggatcgagatc
atccgcgacctgcggctgggcgccttcgatgtgctggtcggcatcaacctgctgcgcgag
ggccttgatatccccgaatgcgccctggtggcgatcttggacgccgataaggaaggcttc
ctgcgctcgcgcacctcgctgatccagaccatcggccgcgccgcccgtaacgttggcggc
cgggtgatcctttatgccgacaagatgaccgattccctgaccttcgccatcgaggaaacc
agccgccgccgccagcgtcagcaagactacaacgccgcccatggcatcaccccggaaacc
gtgcgctcgcgcatttccgatgttctcagcagcgtttacgaaaaagactacgtcaccgtg
accaccggggtatcgggcgacaaccaactggtcggcaaatccctgcgcgagcatctcgcc
gatctcgacaaacgcatgcgcgccgccgccgccgatctggaattcgaggaggccggccgc
ctgcgcgacgagatccgccgcctggaggcgctggaccttggcctgcccggagacgccggg
gcgaccggccttgccgaagccgccatccccttgcgcgccgccgtcgccaaaggccggggg
gcagcggccaagggccgtggtcgcaagggcaaaaggtga
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