Rhodospirillum rubrum F11: F11_07925
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Entry
F11_07925 CDS
T02006
Name
(GenBank) ATP-dependent DNA helicase Rep
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rrf
Rhodospirillum rubrum F11
Pathway
rrf03420
Nucleotide excision repair
rrf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rrf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
F11_07925
03430 Mismatch repair
F11_07925
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rrf03400
]
F11_07925
Enzymes [BR:
rrf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
F11_07925
DNA repair and recombination proteins [BR:
rrf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
F11_07925
MMR (mismatch excision repair)
Other MMR factors
F11_07925
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
AAA_30
UvrD_C_2
Viral_helicase1
PcrA_UvrD_tudor
AAA_11
Motif
Other DBs
NCBI-ProteinID:
AEO48052
LinkDB
All DBs
Position
1809079..1811385
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AA seq
768 aa
AA seq
DB search
MDDPFELDEPSPPAPRFQGAEPPWLAGLNPEQRAAVTTTDGPVLVLSGAGTGKTRVLTAR
LAQILATRPVRPWQVLAVTFTNRAAREMRERAGAMIGPMAEQVWLGTFHALGVRMLRRHG
DLVGLRSGFTILDADDQLRLLKQILEAEGIDTKKWTPQAGMGLIQRWKDKGLLPEAVPAG
DGGREYAGGRAVDLYKQYQQRLAVVNAADFGDLLLHCLTIFTKHPDVLADYSKMFHYILV
DEYQDTNVAQYLWLRLLARGHGNICCVGDDDQSIYSWRGAEVGNILRFEADFPGATVVRL
ERNYRSTPTILAAASGLIRHNKGRLGKDLRAGEGDEAGDAVIVRGLWDGEEEARRVVDDI
ETRQRAGDRLNGMAVLVRAGFQTRAFEERLILAGVPYRVVGGARFYERQEIRDAIAYLRL
VAQPDDSLAFERIINLPRRGLGDASLQTLMRASRMASISLMRAAREAIETDELRPQARKA
LRAFLDDMGRWRSLADAMAPDELCGTVLDESGYLEMWRKDKSPDAQGRVENLKELVSALK
EFESLGAFLEHVSLVMDNEARATEDAVTLMTLHAAKGLEFDTVFLPGWEEEIFPHRRALD
ENGAEALEEERRLAYVGLTRARKRAIISFVANRRVYNEWRACLPSRFIDELPPEVVERDS
ASGVYGSGAQGYADAPGGWGRLGGPGSWGGGWGNAAPARVPAAGDTPWQTRDRSGDDQPS
LRPGDRVFHDKFGGGTVLAADQGRLEIDFDKAGIKKVMGGFVRKAEGT
NT seq
2307 nt
NT seq
+upstream
nt +downstream
nt
atggacgatcccttcgagcttgacgagccgtcgcctcccgccccccgtttccagggagcc
gagccgccgtggcttgccggccttaatcccgagcagcgcgctgccgtcaccaccaccgat
ggcccggtgctggtgctgtcgggggcggggaccggcaagacccgggtgctgacggcccgc
ctcgcccagatcctggccacccggccggtgcggccctggcaggtgctggcggtgaccttc
accaaccgcgccgcccgcgagatgcgcgagcgcgccggggcgatgatcggccccatggcc
gaacaggtgtggcttggcactttccatgccctgggcgtgcgcatgctgcgccgtcacggc
gatttggtcggcttgcgctcgggtttcaccattcttgatgccgacgatcaactgcgcctg
ctcaagcagatcctggaagccgaggggatcgataccaagaaatggacgccccaggcgggg
atggggctgatccagcgctggaaggacaaggggctgctgcccgaggcggttcccgccggc
gacggcgggcgggagtatgcgggcggacgggcggttgatctgtacaagcagtatcaacaa
cggctggcggtggtgaacgccgccgatttcggcgatctgctgctgcactgcctgaccatc
ttcaccaagcatcccgatgttctggccgattattccaagatgtttcactacatcctggtc
gatgagtatcaagataccaacgtcgcccaatacctgtggctgcgcctgctggcgcgcggc
catggcaatatctgctgcgttggcgatgacgatcagtcgatctattcctggcgcggcgcc
gaggttggcaacatcttgcgcttcgaggccgatttccccggggcgacggtggtgcgcctg
gaacgcaattatcgctcgacgccgaccattctggccgccgccagcggcctgatccgccat
aacaaggggcggctgggcaaggatctgcgggcgggggagggcgacgaggccggcgacgcg
gtgatcgtgcgcgggctgtgggatggcgaggaggaggcgcgccgggtcgtcgatgacatc
gagacccgccaacgcgccggcgatcgcctgaacggcatggcggtgctggtgcgtgccggc
tttcagacccgcgccttcgaagagcggttgatcctggccggcgtcccctatcgggtggtc
ggcggcgcgcgtttctacgagcgccaggaaatccgcgacgccatcgcctatctgcgtctg
gtcgcccaacccgacgacagcctggccttcgagcgcattatcaatctgccgcgccgcggc
cttggcgatgccagtctgcagacgctgatgcgggcatcgcggatggcctcgatcagcctg
atgcgcgccgcccgcgaggcgatcgagaccgacgagttgcggccccaggcccgcaaggcc
ttgcgcgctttcctcgacgacatggggcgctggcggtccctggccgatgccatggcgccc
gacgaactctgcgggacggtgcttgatgaaagcggctatctggagatgtggcgcaaggat
aaatcgcccgatgcccaaggccgggtggaaaacctcaaggaactggtttcggcgctgaag
gaattcgaaagcctgggcgccttcctggagcatgtgtcgctggtcatggacaacgaggcc
cgcgccaccgaggacgcggtgaccctgatgacgctgcatgcggccaagggcctggaattc
gatacggtcttcctgcccggctgggaggaggagattttcccccaccgccgcgccctcgac
gaaaacggcgccgaggccctggaggaggagcggcgcttggcctatgtcgggctgacccgg
gcgcgcaaacgggcgatcatcagcttcgtcgccaaccgccgggtctataacgaatggcgg
gcctgcctgcccagccgcttcatcgacgaactgccgcctgaggtggtcgaacgcgacagc
gccagcggcgtttacggctcgggcgctcaaggctatgccgacgcgcccggcggctggggg
cggctgggcggtccgggaagctggggcggtggctggggcaacgccgcgccggcccgcgtg
ccggcggcgggcgacaccccgtggcaaacccgcgaccgcagcggcgacgaccagccgagc
cttcgccccggggaccgggtgttccacgataaattcggtgggggaaccgttctggccgcc
gatcagggccggctggagatcgatttcgataaggctggcatcaagaaggtgatgggggga
ttcgtccgcaaagccgagggcacgtaa
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