Rhodospirillum rubrum F11: F11_08165
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Entry
F11_08165 CDS
T02006
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rrf
Rhodospirillum rubrum F11
Pathway
rrf03030
DNA replication
rrf03430
Mismatch repair
rrf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rrf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
F11_08165
03430 Mismatch repair
F11_08165
03440 Homologous recombination
F11_08165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rrf03032
]
F11_08165
03400 DNA repair and recombination proteins [BR:
rrf03400
]
F11_08165
Enzymes [BR:
rrf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
F11_08165
DNA replication proteins [BR:
rrf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
F11_08165
DNA repair and recombination proteins [BR:
rrf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
F11_08165
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF655
BtrH_N
Motif
Other DBs
NCBI-ProteinID:
AEO48099
LinkDB
All DBs
Position
1861842..1865354
Genome browser
AA seq
1170 aa
AA seq
DB search
MPDPSPASSALAGGSPANGFVHLRVHTALSMSEGAIQVKALVKLCAKMGMPAVAITDSGN
LFGALELSVTACDMGVQPIIGCQIAVRNEEVRERGFGAGRDLRAPDPDAVVLLAKNASGY
ANLMKIVSRSFIEGDGSEAPQVRLADIEALNDGLILLTGGVGGPLGRLLREGRRDEAAAI
LARHKEHFGDRVYVEIQRHGMADEDRIEADLIDLAYAQNVALVATNEPYYPDRAMFEAHD
VLICMQQKTVIGDETRRRLTPEHYFKPANEMRALFADLPEAVDNTLVIAKRCAVMSEKRK
PILPHSPAVKGRTEAEALCAMAEEGLDKRLEKHVYREGMSEAERIEIAKPYRERLAYELD
VIIKMGFPGYFLIVADFIQWAKDADIPVGPGRGSGAGSCVAWALTITDLDPLRFSLLFER
FLNPERVSMPDFDIDFCQDRREEVIRYVQREYGYERVAQIITFGKLQARAVLRSVGRVLQ
MPLGYVDKICKMVPNNPAAPVTLKEAIEAEPQLRDLQKNDEMVARLLDIGMKLEGLYSHA
STHAAGVVIGDRPLDNLVALYRDPHSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQHA
VRHIAKRGITVDLLDLPLDDRRSYDMLGRGETSGVFQLESTGMRDVLRNMKPDTLEDIVA
IVALYRPGPMDNIPSYIKRKKGEEEVVYLHDSLEPILKETYGILIYQEQVMQAAQIMAGY
SLGGADLLRRAMGKKIKAEMDTQRALFVEGAGKRGTSEAKASEVFDQIAKFAGYGFNKSH
AAAYGLVAYQTAYLKANYPVEFMAATMTYDMHNTDKLAVFKGELRRLDIPLLPPDVNRSF
AVFGVEDGAVRYALGAVKNVGAAAMDALVAEREARGPFKDLADFARRLDGKVINKRLLEN
LIKAGALDSLDGDRAKLLANADVLMRHAQAAAEDRASNQSSLFGGAGATSEPPMKFRACA
AWTITETLAHERDAMGFYLSAHPLDIYGDSLERLDVVPIEMLPGHLRGGGSGAVKLAVTP
GARKERIGKSGSRYAFVELSDATGSCETMVFSEVLGASRELLDSGRPLLVRADARLEGEE
VRLLAQAIELLDDAVARAARRIKVSFSDSGPIPRLAEIIRADGPGNRNILLVADLGDREV
EFRLDGGFALRSETLAALRNVPGVGEVREV
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
atgcccgatccatcccccgcttcgtccgccctcgccggcggctcccccgcgaatggcttt
gtccatctgcgggttcacaccgcgctctcgatgtccgagggggcgatccaggtcaaggcg
ctggttaagctctgcgccaagatgggaatgcccgccgtcgccatcaccgacagcggcaat
ctgttcggcgcccttgagctttcggttacggcctgcgacatgggcgttcagccgatcatc
ggctgccagatcgccgtgcgcaacgaagaggtgcgcgagcgcggatttggcgccgggcgc
gatctgcgtgcgcccgatcccgatgccgtggtgctgctggccaagaacgccagcggctat
gccaatctgatgaagatcgtctcgcgctccttcatcgaaggcgacggcagcgaggcgccc
caggtgcggctggccgatatcgaggccctgaacgacgggctgatcttgctgaccggcggc
gttggcgggcccttggggcggctgctgcgcgagggccggcgcgacgaggccgccgccatc
ctcgcccgccacaaggagcatttcggcgaccgcgtctatgtcgagatccagcgccatggc
atggccgatgaagaccgcatcgaagccgatctgatcgatctggcctatgcccaaaacgtc
gcgctggtcgccaccaacgagccctattaccccgaccgcgccatgttcgaagcccatgac
gtgctgatctgcatgcagcagaaaaccgtcatcggcgatgagacccggcggcggctgacc
cctgagcattatttcaagccggccaacgagatgcgggccttgttcgccgatctgcccgag
gcggtggacaacaccctggtgatcgccaaacgctgcgcggtgatgagcgagaagcgcaag
ccgatcctgccccacagcccggcggtcaaggggcggaccgaagccgaggcgctttgcgcc
atggccgaggaaggcctggataagcgcctggaaaagcacgtttatcgcgaaggcatgagc
gaggccgagcggatcgagatcgccaagccctatcgcgagcgcctagcctatgagcttgat
gtcatcatcaagatgggcttccccggctatttcctgatcgtggccgatttcatccaatgg
gccaaggacgccgatatcccggtgggtccggggcgtgggtcgggggcgggatcgtgcgtg
gcctgggccctgaccatcaccgaccttgaccccttgcgcttcagcttgctgttcgagcgg
ttcttgaaccccgaacgcgtgtcgatgcccgacttcgatatcgacttctgccaggaccgc
cgcgaagaggtcatccgctatgttcagcgggaatacggctatgagcgcgtcgcccagatc
atcaccttcggcaagctgcaggcccgcgccgtgctgcgctcggtcggccgtgtcttgcag
atgccgctcggctatgtcgataagatctgcaagatggtgcccaataatccggccgcgccc
gtcaccctcaaggaagccatcgaggccgagccccagctgcgcgatctgcagaaaaacgac
gagatggtcgcccgcctgcttgatatcggcatgaagctggaggggctctattcccacgcc
tcgacccatgcggcgggtgtggtgatcggcgatcgtccccttgataatctggtcgcgctc
taccgcgatccccattccgatatgcccgtcacccagttcaacatgaaatgggtggagcag
gccggtctggtgaaattcgacttcctcggcctgaaaacgctgacggtcttgcagcatgcg
gtgcgccacatcgccaagcgcggcatcaccgtcgatctgcttgacctgcctttggatgac
cgccggagctacgacatgctggggcgcggcgagaccagcggcgtcttccagcttgaaagt
acggggatgcgcgacgttctgcgcaatatgaagcccgataccctggaagacatcgtcgcc
attgtcgccctctaccgcccggggccgatggacaatatccccagctacatcaagcgcaag
aagggcgaggaagaggttgtctatcttcatgattccctagagccgatcctcaaggaaacc
tatggcatcctgatttatcaggaacaggtgatgcaggcggcccagatcatggccggctat
tccctgggcggcgccgatctgctgcgccgggccatgggcaagaagatcaaggccgagatg
gatacccagcgcgccctgttcgtcgaaggggcgggcaagcgcggcacctcggaggccaag
gcctcggaggttttcgaccagatcgccaaattcgccggctatggcttcaataaatcccat
gccgccgcctatgggctggtcgcctatcaaaccgcctatctgaaggccaactaccccgtc
gagttcatggccgccaccatgacctatgacatgcacaacaccgacaagctggctgttttt
aaaggggaattgcgccgccttgatatccccttgctgccgccggacgtcaatcgctccttt
gccgttttcggcgtcgaggacggcgcggtgcgctatgccctgggcgcggtcaagaacgtc
ggcgccgcggcgatggacgccctggtcgccgaacgcgaggcccggggaccgttcaaggat
ctggccgatttcgcccgtcgcctggatggcaaggtcatcaacaagcgtctgctcgaaaac
ctgatcaaggccggggcgcttgatagccttgatggcgatcgcgccaagctgctggccaat
gccgatgtgctgatgcgccacgcccaggccgccgccgaggatcgggcgtccaaccagtcg
agcctgttcggaggggccggggcgacctcggaaccgccgatgaaattccgcgcttgcgcc
gcctggaccatcaccgagaccctggcccatgaacgcgacgccatgggcttctatttgtcg
gcccatcccttggacatctatggcgacagcctggagcgcctggatgtggtgccgatcgag
atgctgcccggccatctgcgcggcggcggcagcggcgcggtcaagctggcggtcaccccc
ggcgcgcgcaaggagcgcatcggcaaaagcggcagccgctacgccttcgtcgaattatcc
gacgccaccggctcgtgcgagaccatggtgttttccgaggttttgggggccagccgcgag
ttgctcgattccggccggccgttgctggtccgcgccgacgcccggctcgagggcgaagag
gtgcggttgctcgcccaagcgatcgaactgctcgacgacgccgtcgcccgcgccgcccgc
cgcatcaaggtgtcgtttagcgacagcggaccgatcccgcggctggccgagatcatccgc
gccgatggcccgggcaatcgcaatatcctgttggtcgccgatcttggcgatcgcgaggtg
gagttccgcttggacggtggcttcgccctgcgctcggaaaccctggccgccttgcgcaat
gtgcccggcgtgggcgaggtgcgcgaggtttag
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