Rhodospirillum rubrum F11: F11_08890
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Entry
F11_08890 CDS
T02006
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rrf
Rhodospirillum rubrum F11
Pathway
rrf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rrf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
F11_08890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rrf03400
]
F11_08890
Enzymes [BR:
rrf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
F11_08890
DNA repair and recombination proteins [BR:
rrf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
F11_08890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
AAA_16
UB2H
RecG_dom3_C
SecA_DEAD
HTH_Tnp_IS1
Motif
Other DBs
NCBI-ProteinID:
AEO48244
LinkDB
All DBs
Position
complement(2018784..2022317)
Genome browser
AA seq
1177 aa
AA seq
DB search
MKNLLESLAVGRRIEAAGLPEGFDALVLGELAARPGVPAVLHVARDDVRLARLAETIAFF
HPAVEILEFPAWDCVPYDRVSPNVEIVARRLETLSRLSEEPTRQPGGRLVLTTASAILQR
VPPRQILERGVFSARVGGRLDLGKLLDHLARHGYGRSEQVMEPGEYAVRGGIVDIFPPGA
PEPLRLDLFGDELDSLRSFDPVSQRTTGQRDALILRPMSEVVLDKESISRFRSGYRELFG
TPSAADALYEAISAGLPFMGMEHWLPLFHEGMDTLFAYVPDGPVTLDPGLDGALRSRQDQ
IFEYFEARRLMESVGDGAKASEKPGGGMIYHALPPPRMFLEEDEFLRHCAGRPGAAFSAY
AAPDVATEKGVVGDFLGRPGHEFADIRARAGGNVFDALRDHAQALRAAGKRVVLTAATMG
ARERMTGVLREHGLSPIVTAETWAEALERAKKATVVLTLILDRGFETPDLAVISEADVLG
DRLSRPVRKKKLGDKFIPDISALSEGDLVVHVDHGIGQYEGLETLTAGGAPHDCLRVVYA
DNNRLYVPVENIEVLSRYGSEQAGVQLDKLGGVAWQARKAKLKQRIRDMAEQLIGVAAAR
QLKVGEVISPPEGLYDEFAARFPYAETDDQLRAIADTLDDLAAGRPMDRLICGDVGFGKT
EVALRAAFATAMSGRQVAVVVPTTLLARQHHLTFKERFAGLPVRIGQLSRLVTARDTKAV
KEEMAAGTLDIVVGTHALLAKTVRFRDLGLLIVDEEQHFGVAHKERLKQMRADVHVLTLT
ATPIPRTLQLALTGVREMSIIATPPVDRLAVRTFVLPFDPVVVREAILRERFRGGQCFYV
CPRLTDIDKVMERLTTLVPDIRAVVAHGQMAPSRLEEVMTAFADGQYDVLVATNIVESGL
DIPRANTIIIHRADMFGLAQLYQLRGRVGRARARGYAYLTLPPGRTVSKTAAKRLDVMQT
LDTLGAGFTLASHDLDIRGAGNLLGDEQSGHIKEVGIELYQQLLEEAVAAAREGPGVEEA
SGAWSPQIQLGTPILIPDSYVKDLGLRLGLYRRIAGVTDEAEIDEMAAEMVDRFGPLPDE
VENLLKVVTIKVLCRRANAEKVDAGPKGAVLSFRDNLFPNPGGLVRFIGQNVATVKLRPD
HKLVYRRDWEVARERIQGLGKLMRTLADIADEERPGR
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaaaccttcttgagtccctggcggtcggccgccgaatcgaagccgccggcctgcct
gaaggcttcgatgccctggtcttgggcgagcttgccgcccgccccggggttccggccgtt
ttgcatgtggcgcgcgatgacgtgcggctggcccggctggccgaaacgatcgccttcttc
catcccgccgtcgagattctggaatttcccgcctgggattgcgtgccctatgaccgggtc
tcgcccaatgtggaaatcgtcgcccgccggcttgaaacgctgagccgcctgagcgaggag
ccgacgcgccagcccggcggccggctggtgctgaccacggcttcggcgatcttgcagcgc
gttccgccgcgccagatcctcgagcgcggagtgttcagcgcccgggtcggcggccggctt
gatcttggcaagctccttgatcatctggcccgccatggctatggccgctccgagcaggtg
atggagcccggcgaatacgccgtgcgcggcggcatcgtcgatatcttcccccccggcgcc
cccgaacctttgcgcctggatctgtttggcgacgagcttgattcgctgcgcagcttcgat
ccggtcagccagcgcaccaccggccagcgcgacgccctgatcttgcggccgatgagcgag
gtggtgctcgataaggaatcgatcagccgcttccgttcgggctaccgcgagctgtttggc
acgccctcggccgccgatgcgctctatgaggcgatctcggccggtctgcccttcatgggc
atggagcattggctgccgctgttccatgagggcatggatacgctgttcgcctatgtgccc
gacggaccggtcaccctcgaccccggccttgatggcgccttgcggtcgcgccaggaccag
attttcgagtatttcgaagcccgccggctgatggaaagcgttggcgatggcgccaaggcc
agcgaaaagcccggcggcggcatgatctatcacgccctgccgccgccccggatgttcctg
gaggaggacgaattcctccgccattgcgcggggcggcccggcgccgccttcagtgcctat
gccgcccccgacgtggcgaccgaaaagggcgttgtcggcgatttccttggccgcccgggc
catgaattcgccgatatccgcgcccgcgccggcggcaatgtcttcgacgccctgcgcgat
cacgcccaggccctgcgcgccgcgggcaagcgggttgttctgacggcggcgacgatgggg
gcgcgcgagcgcatgaccggcgtgctgcgcgagcatggcctgagcccgatcgtcaccgcc
gaaacctgggccgaggcgttggagcgggccaagaaggcgacggtcgttctgaccttgatc
cttgaccggggctttgaaacccctgatctggcggtgatttccgaagccgacgtgctgggg
gaccgcctgtcgcggccggtacgcaagaagaagctgggcgataagttcatccccgatatc
tcggccctgtcggaaggcgatctggtggtccatgtcgaccacggcatcggccaatacgag
ggcctggaaaccctgaccgccggcggcgccccccatgactgcctgcgcgtggtctatgcc
gacaacaaccgcctctatgtgcccgtcgagaatatcgaagtcctcagccgctatggctcg
gagcaggccggggtccagcttgacaagctgggcggcgtcgcctggcaggcgcgcaaggcc
aagctcaagcagcgcatccgcgatatggccgaacagctgatcggcgtcgccgccgcccgc
cagctcaaggttggcgaggtcatcagcccgcccgagggcctgtatgacgaattcgccgcc
cgcttcccctatgccgaaaccgacgatcagctgcgggcgattgccgataccctggatgat
ctggccgccggccggccgatggaccgcctgatttgcggcgatgtcggctttggcaagacc
gaggtggcgctccgcgccgccttcgccacggcgatgagcggccggcaggtggcggtggtg
gtgcccaccaccttgctcgcccgccagcatcatctgaccttcaaggaacgcttcgccggc
ctgccggtgcgcatcggccagttgtcgcggctggtcacggccagggacaccaaggcggtc
aaggaggagatggcggccggcacgctcgatatcgtcgtcggcacccatgcgcttttggcc
aagacggtgcgcttccgcgacctgggcctgctgatcgtcgacgaggagcagcattttggc
gtcgcccataaggaacgcctgaagcagatgcgcgccgatgtccatgtgctgaccctgacg
gcgacgccgatcccgcgcaccttgcaactggccctgaccggcgtgcgcgaaatgagcatc
atcgccaccccgccggtcgaccggctggcggtgcggaccttcgtgctgcccttcgatccg
gtggtggtccgcgaggccatcctgcgcgaacgcttccgcggcggtcagtgcttctatgtc
tgccccaggctgaccgatatcgacaaggtgatggaacgcctgaccaccctggttcccgat
attcgggcggtggtcgcccatggccagatggcgccctcgcgcttggaagaggtgatgacc
gccttcgccgatggtcagtacgacgtgctggtcgccaccaatatcgtcgaaagcggcctc
gacatccccagggccaataccatcatcatccaccgcgccgatatgttcggccttgcccag
ctttatcagctgcgcggccgggttggccgggcgcgggcgcgtggctatgcctatttgacc
ctgccgcccggccgcacggtctcgaaaaccgccgccaagcggctggatgtaatgcagacc
ctcgacaccctgggggccggcttcaccctggccagccatgatcttgatattcgcggcgcc
ggtaacctgctcggcgatgaacaatcgggccatatcaaggaagtcggcatcgagctttat
cagcagcttctggaagaggcggtggccgccgcccgcgaggggccgggggtggaagaggcc
agcggcgcctggtcgccgcagatccagctcggcacgccgatcctcatccccgattcctac
gtcaaggacctcgggctgcgccttggcctctatcgccgtatcgccggagtcaccgacgaa
gcggagatcgacgagatggccgccgagatggtcgatcgcttcggcccgctgcccgacgag
gtggagaacctgctgaaggtggtgaccatcaaggttctgtgccgccgcgccaatgcggaa
aaggtcgatgccggccccaagggggcggtgctgtccttccgcgacaacctgtttcccaat
ccgggcggtctggtgcgcttcatcggtcagaacgtcgccaccgtcaagctgcgtcccgat
cacaagctggtctatcgccgtgactgggaggttgcgcgcgagcggatccaggggctgggc
aaattgatgcgcaccttggccgatatcgccgacgaggagcggccgggccgctga
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