Rhodospirillum rubrum F11: F11_09845
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Entry
F11_09845 CDS
T02006
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rrf
Rhodospirillum rubrum F11
Pathway
rrf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rrf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F11_09845
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rrf03019
]
F11_09845
Enzymes [BR:
rrf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
F11_09845
Messenger RNA biogenesis [BR:
rrf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
F11_09845
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AEO48435
LinkDB
All DBs
Position
2219219..2220400
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AA seq
393 aa
AA seq
DB search
MTEFASLDLIEPLARAVTALGYTVATPIQAGAIPPQLLGRDVLGIAQTGTGKTASFVLPL
LQRLTKDPQPRVPGRPRALILTPTRELAQQITESIGDLGRTLSAIRCGVVVGGVDILRQT
RMVQRGLEILVATPGRLQDLMNRKAVDLRAIEVLVLDEADRMLDMGFAPAVKKIAAVLPR
KRQTVMFSATLPNEVTGLVASLMNDPVRVEVAPAASVANRIDQRVLFVEQTNKRKLLLDL
LGDARKVERAIVFTRTKHGANKLGIFLLEYGVKSDVIHGNKSQGARQRALNDFKSGKVRA
LVATDIAARGIDVDGITHVINFDLPNEPESYVHRIGRTARAGAAGIALSLCAPQEMPYLK
AIEKVIKSRIDVDSTHAFHTPSMARAHGSHGHR
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaatttgcttcgctcgacttgatcgagccgcttgcccgcgccgtcacggcgctg
ggctataccgttgcgactcccattcaggcgggggctatccctccgcagctgttgggacgc
gacgtgctgggcattgcccaaaccgggaccggcaagaccgcgtccttcgtcctgcccctg
cttcagcgcctgaccaaggacccccagccccgggttcccggccggccgcgcgcccttatc
ctgacgccgacccgcgaactggcccagcagatcaccgaaagcatcggcgaccttggccgg
acgctgtcggccattcgctgcggcgtggtggttggcggggtcgatatcctgcgccagacc
cgcatggttcagcgcggcttggaaatcctggtggcgacgcccggccgcctgcaagatctg
atgaaccgcaaggccgtcgacctgcgcgccatcgaagttctggtgcttgacgaagccgac
cgcatgctcgacatgggcttcgcccccgccgtcaagaagatcgccgccgttctgccgcgc
aagcgccagacggtgatgttctcggccaccctgcccaatgaagtgaccgggctggtcgcc
agcctgatgaacgatccggtgcgcgttgaagtcgctccggcggccagcgtcgccaatcgc
atcgaccagcgcgtgctgttcgtcgaacagaccaacaagcgtaagctgttgcttgatctg
ctcggcgacgcccgcaaggtcgaacgcgccatcgtcttcacccgcaccaagcacggcgcc
aacaagctgggcatcttcttgctggaatacggcgtcaaaagcgacgtgatccacggcaac
aagtcgcaaggcgcccgtcagcgcgcgcttaacgacttcaagtcgggcaaggtccgcgcc
ctggtcgccaccgatatcgccgcgcgcggcatcgatgtcgacggcatcacccatgtcatc
aacttcgacctgcccaacgagcccgagagctacgtccaccgcatcggccgcacggcgcgg
gccggcgccgcgggcatcgcgctttcgctctgcgccccccaggaaatgccctatctgaag
gcgatcgaaaaggtcatcaaaagccggatcgacgtggattccacccacgccttccatacg
ccgtcgatggcccgcgcccacggcagccacggccaccgttaa
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