Rhodospirillum rubrum F11: F11_10660
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Entry
F11_10660 CDS
T02006
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
rrf
Rhodospirillum rubrum F11
Brite
KEGG Orthology (KO) [BR:
rrf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rrf03016
]
F11_10660
Enzymes [BR:
rrf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
F11_10660
Transfer RNA biogenesis [BR:
rrf03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
F11_10660
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
AEO48596
LinkDB
All DBs
Position
2399339..2400499
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AA seq
386 aa
AA seq
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MPLISTTKDLADFCARLSTESFVTVDTEFMREKTYWPKLCLIQLAGTTEAHCVDPLAPDI
DMAPLFALMANESVLKVFHAARQDLEIFLHESGHLPKPIFDTQVAAMVCGFGDSVGYETL
VAKLAKARIDKSMRFTDWARRPLNDRQLVYAAGDVTHLRVVYERLAETLAANGRTAWLDQ
EMAILTDPAHYRVEPEDAWMRIKARSRSARFLALLQELAAWRERTAQERDLPRNRVMRDE
GLLEIAASAPTTPDALSQLRSVSKGMAEGTMGLGILEAVRLAQAIPEKALPHPPDREDLP
QGLGPVVDLLKVLLKMKCEEAGVAQKLVANMNDLERIAADDNADVLAMEGWRRALFGEDA
LRLKHGHLAIALTADGQGLRVIPLSN
NT seq
1161 nt
NT seq
+upstream
nt +downstream
nt
atgcccttgatttccaccaccaaagacctcgccgatttttgtgccaggctgtccaccgag
tccttcgtgaccgtggacacagaattcatgcgcgaaaagacctattggcccaagctgtgc
ctgatccagcttgccggcaccacggaggcccattgcgtggaccccctggcgcccgacatc
gacatggcgccgctgttcgccttgatggccaatgaaagcgtgctgaaggtttttcatgcc
gcccgccaggatctggagatctttctccatgaatcgggccatctgcccaagccgatcttc
gatacccaggtcgccgccatggtctgcggctttggcgattcggtcggctatgaaaccctg
gtcgccaagctggcgaaagcgcggatcgataaatccatgcgcttcaccgactgggcgcgc
cgccccttgaacgaccgccagttggtctatgccgccggcgacgtcacccatctgcgcgtc
gtctacgagcgtctggccgagaccctggccgccaatggccgcacggcctggctggaccag
gagatggccatcctgaccgatccggcccattaccgggtcgaaccggaagacgcctggatg
cggatcaaggcgcgctcgcgctcggcccgcttcctcgccctgctccaggaactggcggct
tggcgcgagcggaccgcccaggaacgcgatctgccgcgcaaccgggtgatgcgcgacgaa
ggcctgctggaaatcgccgccagcgccccgaccacccccgacgccctgtcgcagctgcgc
agcgtgtccaagggcatggccgaaggcaccatgggtttggggatcctggaggccgtgcgc
cttgcccaggcgatccccgaaaaggccctgccccacccgcccgaccgcgaagacctgccc
caggggctgggtccggtggtcgatctgctcaaggtgcttctgaaaatgaagtgcgaggag
gccggggtggcgcagaagctggtcgccaatatgaacgaccttgaacgcatcgccgccgat
gacaacgccgatgtcctggcgatggagggctggcgccgcgccctgtttggcgaggacgcc
ctgcgccttaagcacggccacctcgccatcgccctaaccgccgacggccagggcctgcgc
gtcatcccgctcagcaactaa
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