Rhodospirillum rubrum F11: F11_13835
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Entry
F11_13835 CDS
T02006
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rrf
Rhodospirillum rubrum F11
Pathway
rrf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rrf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
F11_13835
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rrf03021
]
F11_13835
03400 DNA repair and recombination proteins [BR:
rrf03400
]
F11_13835
Enzymes [BR:
rrf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
F11_13835
Transcription machinery [BR:
rrf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
F11_13835
DNA repair and recombination proteins [BR:
rrf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
F11_13835
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Peptidase_M23
RPOC_hybrid
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AEO49229
LinkDB
All DBs
Position
complement(3112980..3117161)
Genome browser
AA seq
1393 aa
AA seq
DB search
MNELMKIFGQVSGTQAFDQIKISIASPEKIRSWSFGEIKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRMKYRGIICEKCGVEVTLSKVRRERMGHIELAAPVAHIWFMKSL
PSRVGLLIDMTLKDLERVLYFENYVVVEPGLTPLKLHEMLSEEQYQRAVEEYGEDSFTAG
IGAEAIRDMLMSIDLETLKTDMKVELRDTTSEAKRKKLVKRLKIVDAFIESGCRPEWMIL
EVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIIRNEKRML
QESVDALFDNGRRGRAITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGP
ELKLHQCGLPKKMALELFKPFVYSKLEQYHYATTIKAAKRMVEKERPEVWDILEEVIREH
PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPTQDIVLGLYYLTLDREGEKGEGMAFASLNEIEHALQA
RVVSLQARVKARLHTIDENGAPVIRTVETTPGRMLLSRLLPRHTALPFSVINRLLRKKDI
TDVIDTVYRHCGQKETVIFCDRVMQLGYAHAARAGISFGKDDLVIPPTKAQLVADTDAEV
KEFEQQYQDGLITQGEKYNKVVDAWSHCTERVADEMMKEIAKIEPGKPVNSVYMMAHSGA
RGSAAQMKQLAGMRGLMAKPSGEIIETPIVSNFKEGLTVLEYFNSTHGARKGLADTALKT
ANSGYLTRRLVDVAQDAIIVIEDCGTSRGITAMPVVEGGQIIASLGERVLGRTAAEDIKD
TDGTIIVPLGKMIEEHDVELLEEAGIEQVRIRSVLTCEAETGICGKCYGRDLARGTKVNI
GEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQRGAEQSSVEAAFDGKIVMENRAVVGTSEN
VLIVMSRNCEVKITDEAGREKARYRIPYGSKLLTDEGRMVTKGDRLAEWDPYTVPIITER
EGIAIYNDLVEGVSVREVTDEATGISSKVVVEWKNMPKGTDLKPRITLRDDRGEGITLAN
GLEARYFMSVDTILSVENGQRVKAGDVLGRIPREGSKTRDITGGLPRVAELFEARKPKDH
AIISEIDGRVEFGKDYKSKRRLLVVPEDGDPVEYLLPKGKHLTIQEGDYVRKGDPLMDGN
PVPHDILRVMGVEALANYLIKEIQDVYRLQGVKINDKHIEVISRQMLQKVEITEPGDTTF
LVGELIDRTDFQIENEKTLKENGRPANSIPVLQGITKASLQTHSFISAASFQETTRVLTE
AAVSGKSDSLMGLKENVIVGRLIPAGTGAMMNRLRALAATRDKEIEDSRGAEMVPVLGAA
ESFTPRLPEPPAE
NT seq
4182 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaactcatgaagatctttggtcaggtcagcggcacccaggcgttcgaccagatc
aagatttccatcgccagcccggagaagatccggtcgtggtcctttggtgagatcaagaag
ccggaaaccatcaactaccggacgttcaagccggaaagggacggtctgttctgcgcccgc
attttcgggccgatcaaggattacgagtgcttgtgcggcaagtacaagcgcatgaaatac
cgcggcattatctgcgagaagtgcggcgttgaagtcacgctctcgaaggtgcgccgcgag
cgcatgggccatatcgaactggccgccccggtcgcccacatctggttcatgaagtcgctg
ccgtcccgcgtcgggctgctcatcgacatgaccctgaaggacctcgagcgggttctctat
tttgaaaactacgtggtggtcgagcccggcctgaccccgcttaagctgcacgagatgctc
tcggaagagcagtatcagcgcgcggtcgaggaatacggcgaggattcgttcaccgccggc
atcggcgccgaagccatccgcgacatgctgatgagcatcgatcttgagaccctcaagacc
gatatgaaggtcgagctgcgcgacaccacctcggaagccaagcgcaagaagctggtcaag
cggctgaagatcgtcgacgccttcatcgaatcgggctgccggcccgagtggatgatcctg
gaagtcattccggtgatcccgcccgagctgcgtccgctggtcccgctcgatggcggccgt
ttcgccacctccgacctcaacgacctctaccgccgcgtcatcaaccgcaacaaccgtctg
aagcggctgatcgaactgcgcgctcccgatatcatcatccgcaacgaaaagcggatgctt
caggaatcggtcgacgccttgttcgacaacggccgtcgcggccgggcgatcaccggggcc
aacaagcggccgctgaagtcgctgtcggatatgctcaagggcaagcagggtcgcttccgt
cagaacctgctgggcaagcgcgtcgattactcggggcgttcggtgatcgtggtcggaccg
gagctgaagctccaccagtgcggcctgcccaagaagatggcgctcgagctgttcaagccc
ttcgtctattcgaagcttgagcagtatcactacgcgaccaccatcaaggcggccaagcgc
atggtcgagaaggagcgtcccgaggtttgggacatcctggaagaggtcatccgcgaacac
ccggtgatgctcaaccgcgcgccgacgctgcaccgcctgggcatccaggccttcgagccg
gtgctgatcgaaggcaaggcgatccagcttcatccgctggtgtgcaccgccttcaacgcc
gacttcgacggcgaccagatggccgtccacgtcccgctgtcgctcgaggctcagctcgaa
gcccgcgtgctgatgatgtcgaccaacaacatcctcagcccggccaacggcaagccgatc
atcgtgccgacccaggatatcgtgcttggcctttattacctgacccttgatcgcgaaggc
gagaagggcgagggcatggccttcgcctcgctcaacgagatcgagcatgccttgcaggcc
cgcgtcgtcagcctgcaggcccgggttaaggcccgcctgcatacgatcgacgagaacggc
gccccggtcattcgcacggtcgagaccaccccgggccgcatgctgctgtcgcggctgttg
ccgcgccacacggcgctgcccttctcggtgatcaaccgcctgctgcgtaagaaggacatc
accgacgtcatcgataccgtctaccgccactgcggtcagaaagagacggtgatcttctgc
gaccgcgtcatgcagctgggctatgcccacgccgcgcgcgccggcatctcgtttggcaag
gacgatctggtcattccgccgaccaaggcccagctcgtcgccgacaccgacgccgaggtc
aaggagttcgagcagcagtaccaggacggcctgatcacccagggtgaaaagtacaacaag
gtggtcgacgcttggtcccattgcaccgagcgcgtcgccgacgagatgatgaaggagatc
gccaagatcgagccgggcaagcccgtcaactcggtctatatgatggcgcactccggcgcc
cgtggttcggccgcccagatgaagcagctcgccggtatgcgcggcctgatggccaagccg
tcgggcgagatcatcgaaacgccgatcgtgtcgaacttcaaggaaggcctgaccgtgctg
gagtacttcaactccacccacggcgcccgtaagggtctggccgataccgccttgaagacg
gcgaactcggggtatctgacccgtcgtctggttgacgtggcccaggacgcgatcatcgtt
atcgaggattgcggcacctcgcgcggcatcaccgccatgccggtggtcgaaggcggccag
atcatcgcctcgctcggcgagcgggtgctggggcggaccgcggccgaggacatcaaggac
accgacggcaccatcatcgtgccgctgggcaagatgatcgaggaacacgacgtcgaactg
ctggaagaggcggggatcgagcaggtgcgcatccgttcggtgctgacctgcgaggccgag
accggcatctgcggcaagtgctacggccgtgatctggcgcgcggcaccaaggtcaacatc
ggcgaggcggtgggcgtcatcgccgcccagtcgatcggcgagccgggcacccagctgacg
atgcggaccttccacatcggcggcgccgcccagcgtggcgccgagcagtcgagcgtggaa
gcggccttcgacggcaagatcgtcatggagaaccgggcggtcgtcggtacctcggaaaac
gttctgatcgtcatgtcgcgcaattgcgaggtgaagatcaccgacgaggccggccgcgaa
aaggcccgctaccgcattccctatggctccaagctgctcaccgatgagggccgcatggtg
accaagggcgatcgcttggccgagtgggatccctacacggtgccgatcatcaccgagcgc
gagggtatcgcgatctataacgatctggtcgagggcgtgtccgttcgcgaagtcaccgac
gaggccaccggcatttcgtcgaaggtggtggtcgagtggaagaacatgcccaagggcacc
gacctcaagccgcgcatcaccttgcgcgatgaccggggcgagggcatcaccctggccaac
ggtctggaagcccgctacttcatgagcgtcgacaccatcttgtcggtcgagaacggccag
agggtgaaggccggtgacgtgctgggccgaattccccgcgagggatcgaagacgcgtgac
atcaccggtggtctgccgcgcgtggccgagctgttcgaggcgcgcaagcccaaggatcac
gccatcatctccgagatcgacggtcgcgtcgaattcggcaaggactacaagtccaagcgc
cgcctgctggtggtgcccgaggatggcgatccggtggaatacctgctgcccaagggcaag
catctgaccattcaggaaggcgattacgtccgcaagggcgatccgctgatggacggcaac
ccggttccccacgacatcttgcgcgtgatgggcgtcgaggcgctggccaattacctgatc
aaggaaatccaggacgtctatcgtctgcagggcgtgaagatcaacgacaagcatatcgaa
gtgatctcgcgtcagatgctgcagaaggtggaaatcaccgagcccggcgacaccaccttc
ctggtgggcgagctgatcgatcggacggacttccagatcgagaacgagaagaccctgaag
gaaaacggccgcccggccaattccatcccggttctgcagggcatcaccaaggcctccttg
cagacccactcgttcatctcggccgcctccttccaggagaccacccgggtgctgaccgag
gccgccgtgtcgggcaagagcgacagcctgatgggtctgaaggagaacgtcatcgtcggc
cgcctcatcccggcgggaacgggcgcgatgatgaatcgcctgcgcgcccttgccgcgacc
cgcgacaaggaaatcgaagactcgcgcggcgccgagatggttccggttctgggcgcggcc
gagtctttcacgccaagactgcctgaaccgcccgccgaataa
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