Rhodospirillum rubrum F11: F11_18520
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Entry
F11_18520 CDS
T02006
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
rrf
Rhodospirillum rubrum F11
Pathway
rrf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rrf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F11_18520 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rrf03021
]
F11_18520 (rho)
03019 Messenger RNA biogenesis [BR:
rrf03019
]
F11_18520 (rho)
Transcription machinery [BR:
rrf03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
F11_18520 (rho)
Messenger RNA biogenesis [BR:
rrf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
F11_18520 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_22
OB_RNB
AAA_25
Spore_III_AA
S1CSD-TOTE-2
AAA
Fungal_virus_P2_C
NACHT
Motif
Other DBs
NCBI-ProteinID:
AEO50164
LinkDB
All DBs
Position
4157912..4159168
Genome browser
AA seq
418 aa
AA seq
DB search
MHLQELKSKSPADLLAFAEELEIENASNLRKQDMMFAILKQLAENDTAIFGEGVLEILQD
GFGFLRAPESNYLPGPDDIYVSPSQVRRFGLRTGDTVEGQIRAPKDGERYFALLKVNKIN
FEAPESVRHRINFDNLTPLYPDERLKLEIDDPTRKEFTTRIIDLITPLGKGQRALIVAPP
RTGKTVMLQNVAHAISANNPEVYLIVLLIDERPEEVTDMARSVNGEVVSSTFDEPASRHV
QVAEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALQRPKRF
FGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIILDRKLADRRVFPSIDI
ARSGTRKEELLVRKDVLSKMWVLRRILSPMGVQDAMEFLLGKMKETKNNDDFFDAMNS
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgcaccttcaggaactgaaaagcaaatctccggccgatcttttggctttcgccgaagaa
ctggagatcgagaacgcgagcaacctgcgcaagcaggacatgatgttcgcgatcttgaag
caactcgccgaaaatgataccgcaatctttggcgagggggttctggaaattcttcaggac
ggcttcggcttcctgcgggcgcccgagtccaattacctgcccgggcccgatgatatttat
gtctcgcccagtcaggtccgtcgcttcggtctgcgcaccggcgatacggtcgagggccag
atccgcgcccccaaggatggcgagcgctatttcgccctgctcaaggtcaataagatcaac
tttgaggcgccggaatccgtccgtcaccgcatcaatttcgacaatctgacgccgctctat
cccgatgagcggttgaagctggaaatcgacgatccgacccgcaaggaattcaccacccgg
atcatcgatctcatcacgccgctgggcaagggccagcgcgccctgatcgtggcgccgccg
cgcaccggtaaaacggtgatgctgcagaacgtcgcccatgcgatttcggccaataatccg
gaagtctatctgatcgtgctgctcatcgacgagcggcccgaggaagtgaccgacatggct
cgctcggtgaacggcgaggtggtcagttccaccttcgacgaaccggcctcgcgccacgtt
caggtcgccgagatggtgatcgaaaaggccaagcgcctggtcgagcacaaacgcgacgtc
gtcatccttcttgattcgatcacccgtctcgcccgcgcctataacaccgtggtgcccagt
tcgggcaaggtgctgaccggtggtgtcgacgccaatgccctgcagcgccccaagcgcttc
ttcggcgccgcccgtaatatcgaagagggcggatcgctgaccatcatcgccacggcgctg
atcgataccggatcgcgcatggacgaggtgatcttcgaagagttcaaggggaccggtaac
tcggaaatcatcctggaccgcaagctcgccgaccgccgcgtcttcccgtcgatcgatatc
gcccgctcgggcacccggaaggaagaacttctcgtccgcaaggatgtgctgtcgaagatg
tgggtgctgcgccggatcctctcgccgatgggcgttcaggacgccatggaattccttctt
ggcaagatgaaggaaaccaagaacaacgacgatttcttcgacgcgatgaattcctga
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