Rhodospirillum rubrum F11: F11_18905
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Entry
F11_18905 CDS
T02006
Name
(GenBank) exodeoxyribonuclease III
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
rrf
Rhodospirillum rubrum F11
Pathway
rrf03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rrf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
F11_18905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rrf03400
]
F11_18905
Enzymes [BR:
rrf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
F11_18905
DNA repair and recombination proteins [BR:
rrf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
F11_18905
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
Motif
Other DBs
NCBI-ProteinID:
AEO50241
LinkDB
All DBs
Position
complement(4242744..4243493)
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AA seq
249 aa
AA seq
DB search
MARLVESRAIDVLCLQEIKARPDHVPTAALAEMGLVHQALHTMPGYNGVGIFSRLPLEDS
TPFDWCDRVDCRHLRTRVAGFTLHCLYIPAGGDIPDPEENPRFRHKLAFFDALTDWFDRT
LDPDMPAMVVGDFNVAPLETDVWDHRKMRGVVSHTPVEVAKLGALQASGPWIDAMRRFVP
PEEKLFTWWSYRAKDWRLTNRGRRLDHIWVTPALVDRLRGLEVMDDTRDWTPPSDHVPVI
VHIDPPTKG
NT seq
750 nt
NT seq
+upstream
nt +downstream
nt
gtggcgcggctggttgaaagccgggcgatcgacgtgttgtgtctccaggagatcaaggcg
cggcccgaccatgtgccgaccgccgccctggccgagatggggctggtccatcaggccctt
cacaccatgcccggctataacggcgtcggcatcttctcgcgcctacccctggaagacagc
acgccctttgactggtgcgaccgcgtcgattgccgccacctgcgcacccgggtcgccggc
ttcaccctccactgcctttatatcccggccggcggcgatatccccgatcccgaggaaaat
ccccgcttccgccacaagctggcgttcttcgacgcccttaccgactggttcgaccgcacc
cttgatcccgacatgccggcgatggtggtgggcgatttcaatgtcgccccgctcgagacc
gatgtctgggatcaccgcaagatgcgcggcgtggtcagccatacgccggtcgaggtcgcc
aagctgggcgccctgcaggccagcgggccgtggatcgacgccatgcgccgcttcgtgccg
cccgaggaaaagctgttcacctggtggagctaccgggccaaggactggcggctgaccaat
cgcggccggcggcttgatcacatctgggtcacccccgccctggtcgatcgcctgcgcggc
ctggaggtgatggacgacacccgcgactggaccccgccctcggaccatgtgccggtgatc
gtgcatatcgacccgccaacaaagggctaa
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