Rhodospirillum rubrum F11: F11_19360
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Entry
F11_19360 CDS
T02006
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
rrf
Rhodospirillum rubrum F11
Pathway
rrf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rrf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F11_19360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rrf03019
]
F11_19360
03016 Transfer RNA biogenesis [BR:
rrf03016
]
F11_19360
Enzymes [BR:
rrf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
F11_19360
Messenger RNA biogenesis [BR:
rrf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
F11_19360
Transfer RNA biogenesis [BR:
rrf03016
]
Prokaryotic type
tRNA degradation factors
F11_19360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
KH-I_KHDC4-BBP
KH_NusA_2nd
KH_2
S1_2
DUF8183
KH_PNO1_2nd
PSMbeta
Motif
Other DBs
NCBI-ProteinID:
AEO50332
LinkDB
All DBs
Position
4334832..4336958
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AA seq
708 aa
AA seq
DB search
MSLFNVFRKEIEWGGRKLVLETGRIARQADGAVMASLGDTTVLCTAVGAKTKSKFDFFPL
TVNYQEKTFAAGKIPGGFFKREGRPSEKETLVSRLIDRPIRPLFVHGYKNETQLVCTVLC
HDLENNPDIVAIVGASAALTLSGLPFLGPIGAARVGLIDGAFVLNPTRDQMADSVLDLVV
AGTREGVLMVESEAHELSEQQMLDAVMFGHEGYQPVIDAIIALAEQCAREPRAIEPPAPE
AEAVAAKVREVGEAGLRDAYKEADKMVRHDKVDAVRDAVTAAFAGDDAALALAGAAFKDL
EKDIVRGSILDTGLRIDGRDTKTVRPIEIYPGILPRAHGSALFTRGETQALVTTTLGTGQ
DEQIIDALEGEYRENFMLHYNFPPYSVGEAGRMGSPGRREIGHGKLAWRAIHPMMPAKDA
FPYTVRVVSEITESNGSSSMATVCGTSLALMDAGVPLKNAVAGIAMGLIKEDERFAVLSD
ILGDEDHLGDMDFKVAGTANGITSLQMDIKITSITKEIMNVALNQAKDGRIHILGEMTKA
LGNARSDVSDFAPRITTIKVPPQKVREVIGSGGKVIREITEVTGTKIDIEDDGTIKIASA
DAEATQRAVDWIKGIVAEPEIGVVYTGKVVKIMDFGAFVNFLGTRDGLVHISELSQDRVK
KVGDVVNVGDQVKVKCVGFDDRGKIKLSMKQVDQVTGADLSTQAPAEE
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atgtctctgttcaacgtgttccgcaaggaaatcgaatggggcgggcgcaagctggtcctc
gagaccgggcgcatcgcccgtcaggccgatggcgcggtgatggccagcctgggcgacacc
acggtgctgtgcaccgccgtcggcgcgaagacgaagtcgaagttcgatttctttccgctg
accgtgaactaccaggaaaagacgttcgccgccggtaagatcccgggcggtttcttcaag
cgcgagggtcgtccgagcgagaaggaaaccctggtttcccgcctgatcgaccggccgatc
cggccgctgttcgttcatggctacaagaacgaaacccagctggtttgcaccgttctgtgc
cacgaccttgaaaacaaccccgatatcgtcgccatcgtcggcgcctcggcggctttgacc
ctgtcgggcctgcccttcctcggccccatcggcgccgcccgcgtcggtctgatcgacggc
gccttcgtgctgaacccgacccgtgatcagatggccgactcggtcctcgatctggtggtc
gcgggcacccgcgaaggcgtgctgatggtcgaatccgaggcccacgagctgtccgagcag
cagatgctcgacgcggtgatgttcggccacgagggctatcagcccgtcatcgacgccatc
atcgccctggccgaacagtgcgcccgcgagccccgcgccatcgagccgccggcccccgag
gccgaggccgtggccgccaaggttcgtgaagtcggcgaagccggtctgcgcgacgcctat
aaagaagccgacaagatggtccgccacgacaaggtggatgccgtccgcgacgccgtgacc
gccgccttcgccggcgacgacgccgccctcgccctggccggcgccgccttcaaggatctg
gagaaggacatcgtccgcggctccatccttgataccggcctgcgcatcgacggtcgcgac
accaagaccgtgcgcccgatcgaaatctatccgggcatcctgccgcgcgcccatggttcg
gcgctgttcacccggggcgagacccaggcgctggtcaccaccacgctcggcaccggccag
gatgagcagatcatcgacgccctggaaggcgaataccgcgaaaacttcatgctgcactac
aacttccccccctattcggtgggcgaggccgggcgcatggggtctccgggccgtcgtgaa
atcggtcatggcaagctggcttggcgcgccatccatccgatgatgccggccaaggacgcc
ttcccctacaccgtccgcgtcgtctccgagatcaccgagtcgaacggttcgtcgtcgatg
gccaccgtctgcggcacctcgctcgccctgatggatgccggcgtgccgctcaagaacgcc
gtggccggtatcgccatgggcctgatcaaggaagacgagcgcttcgccgtgctctccgac
atcctgggcgacgaggatcacctcggcgacatggacttcaaggtggccggtaccgccaat
ggtatcaccagcttgcagatggacatcaagatcacctcgatcaccaaggagatcatgaat
gtcgcgctcaaccaggcgaaggacgggcgcatccatatcctgggcgagatgaccaaggcc
ctgggcaacgcccggtcggacgtgtccgatttcgcgccgcgcatcaccaccatcaaggtg
ccgccgcagaaggttcgcgaggtcatcggttcgggcggcaaggtcatccgcgagatcacc
gaagtcaccggcaccaagatcgatatcgaagacgacggcacgatcaagatcgcctcggcc
gatgccgaagcgacccagcgcgccgtcgattggatcaagggcatcgtcgccgagcccgag
attggcgtggtctacaccggcaaggtggtcaagatcatggacttcggcgccttcgtgaac
ttcctcggcacccgcgacggtctcgtccatatttccgagctgtcccaggaccgggtcaag
aaggtcggcgatgtggtcaatgtcggcgatcaggtgaaggtgaagtgcgtcggctttgac
gatcgcggcaagatcaagctgtcgatgaagcaggtcgatcaggtcaccggcgccgatttg
tcgacgcaggcccccgcggaagagtaa
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