Rhodospirillum rubrum F11: F11_19430
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Entry
F11_19430 CDS
T02006
Name
(GenBank) formamidopyrimidine/5-formyluracil/5-hydroxymethyluracil DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
rrf
Rhodospirillum rubrum F11
Pathway
rrf03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rrf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
F11_19430
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rrf03400
]
F11_19430
Enzymes [BR:
rrf01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
F11_19430
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
F11_19430
DNA repair and recombination proteins [BR:
rrf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
F11_19430
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
AEO50346
LinkDB
All DBs
Position
4349659..4350504
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AA seq
281 aa
AA seq
DB search
MPELPEVETVRLGLTPALVGERLSRVAARRPALRLPIPVDLVQRLTGKVVGSLDRRAKYL
LLRMIDGPVALIHLGMSGSMTVGPLAGHAEPGPHDHILFETEAGLRVTFRDPRRFGLITL
AEPETLDDHPLLAKLGPEPLSEAFDAEVLVRRLNGRQAPIKAALLDQGVVAGLGNIYVSE
ALFRAGISPLRPAASVTGAWAEALVAAIRAVLGEAIAAGGSSLRDHRQTDGALGYFQHRF
AVYDRVGQPCPGCDCDVARTGGIERMVQSGRSTFFCGRRQR
NT seq
846 nt
NT seq
+upstream
nt +downstream
nt
atgccagaattacccgaagtggaaaccgtgcgcttgggcttgaccccggctcttgtcgga
gaacggctaagccgggtggcggcgcgacggccggcgctgcgtctgccgatcccggtcgat
ctggtccaacggctgaccggaaaggttgtcggtagtctcgatcgccgggctaagtatctg
ttattacgcatgatcgatgggccggtggcgctgatccatcttggcatgtcgggcagcatg
accgttgggccgctggccggtcatgccgaaccggggccccatgatcatattttgttcgaa
accgaggctggcctgcgcgtcacctttcgcgacccccggcgcttcggtctgatcaccctg
gccgagcccgagactctggatgatcacccgctgctggccaagcttggtcccgagccgctg
tccgaggctttcgacgccgaggtcctggtgcgccggctgaacggccgtcaggcgccgatc
aaggcggcgctgcttgatcagggcgtggtggccgggcttggcaatatctatgtcagcgag
gccttgttccgcgccggcatttcgccgctgcgcccggcggccagcgtcaccggcgcctgg
gccgaggcgctggtggcggcgattcgcgccgttttgggcgaagccatcgccgcgggcggc
tcgtcgttgcgcgaccatcgccagaccgatggggctttgggctattttcagcaccgcttc
gccgtttacgatcgcgtcggccaaccctgcccgggctgcgactgcgatgtggcgcggacc
ggcggcatcgaacggatggtccagtccgggcgatccacctttttctgcgggcgtcgtcag
cggtga
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