Rhizobium ruizarguesonis: J3P73_09610
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Entry
J3P73_09610 CDS
T07270
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
rrg
Rhizobium ruizarguesonis
Pathway
rrg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rrg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J3P73_09610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rrg03019
]
J3P73_09610
Messenger RNA biogenesis [BR:
rrg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
J3P73_09610
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B_2
RMMBL
Lactamase_B
Lactamase_B_3
Anti-Pycsar_Apyc1
Regulator_TrmB
Motif
Other DBs
NCBI-ProteinID:
QSZ02707
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All DBs
Position
1937293..1938963
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AA seq
556 aa
AA seq
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MAKQDELVFLPLGGVGEIGMNLALYGYGPPEHRQWIMVDCGVTFPGPDLPGVDLVLPDIR
FLASERKNLKAIIITHAHEDHYGALADLWPGLNVPVYASGFTAGLLEAKRNFEKAKIGEV
PVTPFKAGDTINVGPFSIEGVAVNHSIPEPMSLMIRTPVGNVIHTGDWKIDHEPSLGPLT
DETRFRQLGDEGVLALMCDSTNALRDGVSPSEKDVSESLRKIIENAEGRVAITTFSSNVG
RIRTVAEAAEAAGREVLLLGSSLKRVVDVAQDIGLMEGVKPFISEDEYGYIPRDKVVVIL
TGSQGEARAALAKLSRDEMRNVAFAAGDIVVFSSRAIPGNEKAIQDIKNGLVEQGVHIIT
DTEALVHVSGHPRRNELQRMYEWTRPKIVVPVHGEATHLTAHKELAEQSGIALVPRVRNG
DILRLAPGPVEVIGEAPHGRIYKDGTLIGDFDEMGIGERKKLSYVGHVAVNVVLDARYDI
VGEPDLISIGLPTYDDEGEDMEDTLFDAAVSAIESIPRARRKDIDMLQEAVRRAIRSAAN
NTWGKKPLVTAFVTKV
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaacaggacgaactggtattcctgcctctgggcggcgttggcgagataggcatg
aatctcgctctctatggctacggcccgcccgagcatcgccagtggatcatggtcgattgt
ggcgtcacttttcctgggcccgatctgccgggtgtcgacctcgtgctgcccgatatccgc
ttcctcgccagcgaaagaaagaacctcaaggcgatcatcatcacccatgcgcatgaagac
cattatggtgcgctcgccgacctctggcccggtctcaacgtgccggtctatgcctctggt
tttaccgccggtctgctcgaagccaagcgcaatttcgagaaggctaagatcggcgaagtg
ccggtgacgccgttcaaggccggcgatacgatcaatgtcggccccttcagcatcgaaggc
gtcgccgtcaaccattcgatccccgagccgatgtcgctgatgatccgcacgccggtcggc
aatgtcatccataccggcgactggaagatcgaccacgagccttcgctcgggcccctgacc
gacgagacacgtttccgccagctcggcgacgagggcgtgctggcgctgatgtgcgattcc
accaatgcgctgcgcgacggtgtttcgccctccgagaaggacgtgtccgaaagcctgcgc
aagatcatcgagaatgccgagggcagggtggcgattaccaccttctcgtcgaatgtcggg
cgtatccgcaccgttgccgaggctgccgaggcggccggccgcgaagtgctgctgctcggc
agttcgctgaagcgcgtcgtcgacgtcgcccaggatatcggcctgatggaaggtgtgaag
cctttcatctccgaggacgaatacggctatatcccgcgcgataaggtcgtcgtcatcctg
accggcagccagggcgaggcgcgggcagcccttgccaagctctcgcgcgacgagatgcgc
aatgtggcgtttgcggcaggcgatatcgtcgtcttttcctctcgcgccattcccggcaac
gagaaggcgatccaggacatcaagaacggcctcgtcgagcaaggtgtgcacatcatcacg
gataccgaggcgctggtccacgtttccggccatcctcgccgcaacgagttgcagcggatg
tatgagtggacgcgaccgaagatcgtcgtgccggtgcatggcgaggcaacgcatctgacg
gcgcacaaggaacttgccgagcaatccggcatcgcactggtgccgcgggtgcgcaacggc
gatatcctgcggctggcgcccggtccggtcgaggtgatcggcgaggcaccgcatggccgg
atctataaggacggcacgctgatcggcgatttcgacgagatgggtatcggcgagcgtaag
aagctctcctatgtcggccatgtcgcggtcaatgtcgtgctcgacgcccgctatgacatc
gtcggcgaacccgacctcatttcgatcggcctgccgacctacgatgacgagggcgaggat
atggaggatacgctcttcgacgcggcggtcagcgccatcgagagcattccgcgcgcccgc
cgcaaggatatcgacatgctgcaggaggccgtgcgccgcgccatccgctcggccgcgaac
aacacctggggcaagaaacctcttgtcaccgctttcgtcaccaaggtctga
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