Rhizobium ruizarguesonis: J3P73_09655
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Entry
J3P73_09655 CDS
T07270
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rrg
Rhizobium ruizarguesonis
Pathway
rrg03030
DNA replication
rrg03430
Mismatch repair
rrg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rrg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
J3P73_09655 (dnaE)
03430 Mismatch repair
J3P73_09655 (dnaE)
03440 Homologous recombination
J3P73_09655 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rrg03032
]
J3P73_09655 (dnaE)
03400 DNA repair and recombination proteins [BR:
rrg03400
]
J3P73_09655 (dnaE)
Enzymes [BR:
rrg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
J3P73_09655 (dnaE)
DNA replication proteins [BR:
rrg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
J3P73_09655 (dnaE)
DNA repair and recombination proteins [BR:
rrg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
J3P73_09655 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF655
HROB
Motif
Other DBs
NCBI-ProteinID:
QSZ02715
LinkDB
All DBs
Position
1944967..1948461
Genome browser
AA seq
1164 aa
AA seq
DB search
MADTAKGSTGEATGTPGFIHLRVHSAYSLLEGALPLKKILYKATGDSQPAIAITDTNNLF
VALEFSQKAMEEGLQPIIGCQVSIDMEDGLETEKRGGQQALVKLPAIVLLAATDAGYERL
VDLVSRAYLGGESNQAVHISASWLEEAGTEGLIALSGALTGPVDVAIKEGHPAQAEARLL
TLKRLFGDRLYVELQRHGTYDKRHEQKIIGLACAHELPLVATNEAFFPTRDDYDAHDALM
AVAHNAIVSDDSRFRLTPDHYLKSRAEMVKLFADLPEALENTIEIATRCSFVLKTRKPIL
PRFTGATDDAEEAERAEASELRRQAVEGLDMRLSTLGMSPGYEEEDYRERLDFELSVIER
MRFPGYFLIVADFIKWAKQHDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNP
ERVSMPDFDIDFCQDRREEVIRYVQAKYGREQVAQIITFGSLQARAALRDVGRVLEMPYG
QVDKICKLVPNNPANPTPLSKAIEEEPKLQEEAAKEPVVARLLDIAQKIEGLYRHASTHA
AGIVIGDRPLSKLVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKVAVDFV
AKLGIKVDLAAIPLDDKKTYEMLSRGETVGVFQVESAGMRKALIGMKPDCIEDIIALVAL
YRPGPMENIPTYNARKHGDEELESIHPMIDHLLKETQGVIVYQEQVMQIAQVLSGYSLGE
ADLLRRAMGKKIKAEMDQQRERFVVGAVKNGVSKPQADNIFELLAKFANYGFNKSHAAAY
AIVSYQTAYMKAHYPVEFLAASMTLDMSNTEKVNDFRQDAKRLGIEVIAPSVQTSFCHFE
TGDNRIYYALAALKGVGESAVDHIVGVRGDKPFASIEDFCLRIDPRQVNRRVLESLIYAG
AFDCFDMDRAQLAAGLDRILGYAQRAQENKLSGQSDIFGSTLTSGPEKISLPPFSPWLPS
ERLLKEFQVLGFYLTAHPLDSYNNILQKMRVQTFAEFSAAIKQGAANARLAGTVISKQER
KTRTGNKMGIIVFSDSSGQFEAVLFSEMLNQYRDVLESGKSFVLTATGEERPEGIGLRIQ
TIQSLEEKSLQMQKALRVYVRDSGPLRMVAGHLNAKGDGLVSFIVIKEEGKREVEVALPE
KYRITPEIAAALRAAPGVIDVELV
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atggcggatacggcaaagggttcaacgggtgaggcgaccggcacgccgggtttcatccac
ctgagggtccattccgcctattcgcttctcgagggcgcgctgccgctgaagaagatcctc
tacaaggcgaccggcgacagccagccggcgattgcgattaccgacaccaacaatctgttc
gtcgccctcgaattctcccagaaggcgatggaggaaggcctgcagccgatcatcggctgc
caggtctcgatcgacatggaagacgggctggaaaccgaaaagcgcggcggtcagcaggcc
ctggtcaagctgccggcgatcgttcttctcgctgcgacggatgccggttacgaacggctg
gtcgatctcgtcagccgggcctatctcggcggcgagagcaaccaggccgttcatatcagc
gcctcctggctggaggaggcgggcacggaagggctgatcgcattgagcggcgccttgacc
gggccggtcgacgtggcgatcaaggaaggccatcccgctcaggcggaagcccggctgctc
acgctgaaacgtctcttcggcgacaggctctatgtcgaactgcagcggcacggcacctac
gacaagcggcacgagcagaagatcatcgggctcgcctgtgcccacgagctgccgctggtt
gcgaccaacgaggctttctttccgacacgcgacgattacgacgctcatgatgcgttgatg
gcggtcgcgcacaacgccatcgtctccgacgacagccgctttcgcctgacgccggatcac
tatctgaagagccgggccgagatggtcaagctcttcgccgacctgccggaagcgctggaa
aatacgatcgagatcgccacgcgctgctccttcgtgctgaagacgcgaaagccgatcctg
ccacgcttcaccggtgcgaccgacgatgccgaggaggccgaacgcgccgaggcgagcgag
ctgcgccgccaggcggtcgaagggctggacatgcggctttcgacgctcggcatgtcgccg
ggttacgaggaagaggattatcgcgaacggctggatttcgagctcagcgtcatcgagcgc
atgcgtttccccggctacttcctgatcgttgccgacttcatcaaatgggccaagcagcac
gacattccggtcggtcccggccgcggttcgggcgctggttcgctggtcgcctatgcattg
acgatcaccgacgtcgatcccttacgtttttcgctgctcttcgagcgcttcctcaatccg
gaacgcgtctcgatgcccgacttcgacatcgacttctgtcaggaccgccgcgaagaggtg
atccgctatgtccaggccaagtatggccgcgagcaggtggcgcagatcatcaccttcggt
tcgctgcaggcgcgtgccgcccttcgcgacgtcggccgtgtgctggaaatgccctacggc
caggtcgacaagatctgcaaactcgtgccgaacaaccccgccaatccgacgccgctgtcc
aaggcgatcgaggaggagccgaagctgcaggaggaggcggcgaaagaacctgttgtcgcg
cgcctgctcgacatcgcccagaagatcgaggggctctaccgccatgcctcgacccatgcc
gccggcatcgtcatcggcgaccggccgctttccaagctggtgccgatgtatcgcgatccg
cgctcggacatgccggtcacccagttcaacatgaaatgggtggagcaggcgggcctcgtc
aagttcgacttcctcggcctgaagacgctgaccgtgttgaaggtcgcggtcgattttgtc
gccaagcttggtatcaaggtcgatctcgcggccattccactcgacgacaagaagacctac
gagatgctgtcgcgcggcgagacggtcggcgtgttccaggtggaaagtgccggcatgcgc
aaggcgctgatcggcatgaagccggactgcatcgaggacatcatcgcgctggtggcgctc
tatcgtcccggcccgatggagaacatcccgacctacaacgctcgcaagcacggcgacgaa
gagctggaatcgatccatccgatgatcgaccacctgctcaaggaaacccagggtgtcatc
gtctatcaggaacaggtgatgcagatcgcccaggtgctgtccggctactcgctgggcgaa
gccgaccttctgcgtcgcgccatgggcaagaagatcaaggccgagatggaccagcagcgc
gaacgcttcgtcgtaggcgccgtcaagaatggtgtatcgaagccgcaggccgacaatatc
ttcgagctgctggcgaagttcgccaattacggcttcaacaagtcgcatgccgccgcctat
gccatcgtctcctaccagaccgcctacatgaaggcgcattacccggtcgaattcctcgcc
gcctcgatgacgctcgacatgtccaacacggaaaaggtcaatgatttccgtcaggatgcc
aagcgcctcggcattgaggtgatcgcaccctcggtgcagacctccttctgccatttcgag
accggcgacaaccgcatctattacgcgctcgccgctctcaagggcgtcggcgaatccgcc
gtcgaccatattgttggggtgcgtggcgacaagccctttgccagcatcgaggatttctgc
ctgcgtatcgatccgcgtcaggtcaatcgtcgcgtgctcgaaagcctgatctatgccggc
gccttcgattgtttcgacatggaccgcgcccagctagcagccggcctcgaccgcattctc
ggttatgcccagcgcgcccaggagaacaaactgagcggccagtcggacattttcggcagt
acgttgacgtcggggcctgagaaaatctccctgccgccgttctcgccctggctcccctcc
gagcggctgctcaaggagttccaggtgctgggcttttatctcacagcccacccgctcgat
tcctacaacaatatcctgcagaagatgcgggtgcagacctttgccgagttttccgccgcc
atcaagcagggcgcggccaatgcgcgccttgccggtaccgtcatctcgaagcaggagcgc
aagactcgcaccggcaacaagatgggcatcatcgtcttctccgattcttcgggccagttc
gaagcggtgctcttttcggagatgctcaaccagtatcgcgacgtgttggagtcaggcaaa
tccttcgtgctgaccgcgacgggcgaggagcggccggagggcatcggcctgcgcatccag
acgatccagtcgctggaggaaaagtcgctgcagatgcagaaggcgctgcgcgtctatgtt
cgcgattccggaccgctgagaatggttgccggccatttgaacgccaagggcgatggcctc
gtttccttcatcgtcatcaaggaggagggcaaacgcgaggtggaagtagcactgccggag
aaataccgcatcacaccggagatcgccgccgcccttcgcgccgcccccggcgtcatcgac
gtcgagcttgtctga
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