Rhizobium ruizarguesonis: J3P73_12160
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Entry
J3P73_12160 CDS
T07270
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rrg
Rhizobium ruizarguesonis
Pathway
rrg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rrg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
J3P73_12160 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rrg03400
]
J3P73_12160 (mfd)
Enzymes [BR:
rrg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
J3P73_12160 (mfd)
DNA repair and recombination proteins [BR:
rrg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
J3P73_12160 (mfd)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
UB2H
MFD_D3
Cas3-like_C_2
RecG_dom3_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QSZ03164
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All DBs
Position
2437458..2440961
Genome browser
AA seq
1167 aa
AA seq
DB search
MIPGFDAKKLAAIAEPLTIGNVPAGLETLLLAELARTGEPVAYVMSDGHRMADLEQMLGF
VAPDIPVLTLPAWDCLPYDRVSPSADTSARRLAALGGLIAHRKKPHAAIVLVTANAMLQK
VAPQDVIESLTFSARPGNQLRMDDLAGRLERNGFERVATVREVGEYAVRGGILDVFVPGS
EEPVRLDFFGDTLESIRSFDPASQRTTGQVRSLDLNPMSEVTLTPDTISRFRKNYLSAFG
ATTRDDALYLAVSEGRRYPGMEHWLPLFYEKLDTVFDYLSGFRIVIDHTVREAADERSKL
VFDYYDARLNSGQPAKGQMTQGTPYKPVTPGQLYLDSKLFVKTLDALGAIRISPFNEHEG
EARRVVNVDARQSQRWARSNAEGGGDAERINIFDVVVKHIADRRAAGAKVLVTAWTEGSL
ERLLQVLNEHGLEKVKPIEALKDVGSLARGEAAAAVLSLEAGFEAGDLVVIGEQDILGDR
MVRRSKRRKRAADFISEVAGLDEGSIVVHAEHGIGRFIGLRTIEAAGAPHACLELQYADE
AKLFLPVENIDLLSRYGGEGTEAQLDKLGGGAWQMRKAKLKKRLLDMADALIRIAAERLT
RHAPMLTTPEGLYDEFAARFPYDETEDQDNAIEAVRSDLGAGRPMDRLVCGDVGFGKTEV
ALRAAFVAAMNGAQVAVVVPTTLLSRQHFKTFSDRFRGLPVRIQQASRLVGAKELALTKK
EVAEGKTDIVVGTHALLGAGIKFANLGLLVIDEEQHFGVKHKERLKELKSDVHVLTLSAT
PIPRTLQLAMTGVRELSLITTPPVDRMAVRTFISPFDSLVIRETLMREHYRGGQSFYVCP
RLADLEDVHAFLQSDVPELKVAIAHGQMPAGELEDIMNAFYEGRYDVLLSTTIVESGLDV
PTANTLIVHRADMFGLAQLYQLRGRVGRSKVRAFALFTLPVNKVLTATAERRLKVLQSLD
TLGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAEVKGVDEIHDTGW
SPQISVGTTVMIPETYVPDLHLRMALYRRLGEITELKEIDGFGAEMIDRFGPMPIEVQHL
LKIVYIKSLCRTANVEKLDAGPKGVVVQFRNKEFPNPANLVGYIGKQGTMAKIRPDHSLF
LTRDLPTPEKRLQGAAVIMTQLAEFAK
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atgatccctggtttcgatgcgaagaagcttgcggccattgccgagccgctgacgatcggc
aatgtgccggcaggtcttgagacgctgctgctcgcggagctcgcccgaacgggagagccg
gtcgcctatgtcatgtccgacggtcatcgcatggccgatctcgagcagatgctgggcttc
gtcgcccccgacattccggttctcactctgccggcctgggactgtctgccttatgaccgc
gtctcgccaagcgccgacacctcggcccgccggcttgccgcactcggcggcctcatcgcc
catcgcaagaagccgcatgcggcaatcgtgctcgtcaccgccaatgccatgctgcagaag
gtggcgccgcaggatgtcatcgaaagcctgactttctcggcccgtcccggcaaccagctg
cgcatggacgatctcgccggtcgtctggaacgcaacggtttcgagcgcgtcgcgaccgtt
cgcgaggtcggtgaatatgccgtgcgcggcggcattctcgacgtcttcgtgccgggttcc
gaagagccggtccgcctcgatttcttcggcgacacgctggagagcatccgcagcttcgat
ccggccagccagcgcacgacagggcaggtgcgctcccttgatctcaacccgatgagcgaa
gtgacgctgacgccggatacgatcagccgcttccgcaagaattacctctccgctttcggc
gcgaccacacgcgacgacgcgctctatctcgccgtctccgaaggccgccgttaccccggc
atggagcactggctgccgctcttctacgagaaactcgataccgtcttcgattatctcagc
ggcttccggatcgtcatcgaccatacggtacgtgaggcagccgatgagcgctccaagctc
gtttttgattattatgacgcccgcctgaattccggccagccggccaagggccagatgacg
cagggcacgccctacaagccggtgacgccgggccagctctatctcgacagcaagcttttc
gtcaaaaccctcgacgcgctcggcgcgatccgcatcagccccttcaacgagcatgagggc
gaggcgcggcgggtcgtcaatgtcgacgcccgccagagccagcgctgggcgcgttcgaat
gccgaaggcggcggcgatgccgaacgcatcaacatcttcgacgtcgtcgtcaagcatatt
gccgatcgccgtgccgccggcgccaaagtgctcgtcaccgcctggaccgaaggttcgctg
gagcggctactgcaggtgctgaacgagcatggcctggaaaaggtcaagccgatcgaggcg
ctgaaggatgtcggttcgctggcgagaggcgaggcggccgctgccgtgctcagtctcgaa
gccggcttcgaggccggcgacctcgtcgtcatcggcgagcaggacatcctcggcgaccgc
atggtgcgccgctccaagcgccgcaagcgcgcagccgatttcatctcggaagtcgcgggc
ctcgacgaaggctcgatcgtcgtccacgccgaacacggcatcggccgttttatagggctc
aggaccatcgaggccgctggtgctccgcatgcctgccttgagctgcaatatgccgacgag
gccaagctgttcctgccggtcgaaaacatcgatcttctctcgcgctacggcggcgagggc
accgaagcccaactcgacaagctcggtggcggcgcctggcagatgcgcaaggccaagctc
aagaagcgcctgctcgacatggccgatgcgctgatccgcatcgccgccgagcgcctgacg
cgccatgcgccgatgctgacgacgccggagggcctttacgacgaattcgctgcccgcttc
ccctatgacgagaccgaggaccaggataacgccatcgaggcggtgcgctccgatctcggc
gccggccgaccgatggaccgtctggtctgcggcgacgtcggttttggcaagaccgaagtg
gcgctacgcgccgctttcgtcgcggcaatgaacggcgcccaggtcgccgtcgtcgtgccg
acgacgctgctttcccgccagcatttcaagaccttttccgaccgtttccgcggtctgccg
gtgcgtatccagcaggcctcgcgcctcgtcggcgccaaggagctggcgctgaccaagaag
gaagtggcggaaggcaagaccgatatcgtcgtcggcacccatgcgctgctcggcgccggc
atcaaattcgccaatctcggtctgctcgtcatcgatgaggagcagcatttcggcgtcaag
cacaaggagcggctgaaggaactgaaaagcgacgtgcacgtgctgacgctgtcggcaacg
ccgatcccacgcaccctgcagcttgccatgaccggcgtgcgcgaattgtcgctgatcacc
acgccgccggtcgaccgcatggcggtgcgcaccttcatctcgcccttcgacagcctggtc
atccgcgagacgctgatgcgcgagcattatcgcggcggccagagcttctatgtctgcccc
aggcttgccgatctcgaggacgtgcatgccttcctgcagtccgatgtgccggagctgaag
gtcgccattgcccatggccagatgccggccggcgaactcgaagacatcatgaacgccttt
tatgaaggccgctacgatgtgctgttgtccacaaccatcgtcgaatccggcctcgacgtg
cccacagccaatacgctgatcgtccaccgtgccgacatgttcggccttgcccagctctat
cagctgcgtggccgcgtaggccgctcgaaggtgcgcgctttcgccctcttcaccctgccg
gtcaacaaggtgctgacggccaccgccgaacgccgcctcaaggtgctgcagtcgctggat
acgctcggagccggtttccagctggcaagccacgatctcgatattcgcggcgccggcaac
ctgctcggcgaggagcagtcaggccatatcaaggaagtcggcttcgaactttatcagcag
atgctggaagaggcggtcgccgaggtcaagggtgtcgacgagatccacgataccggctgg
tcgccgcagatctcggtcggcacgacggtgatgatcccggaaacttacgttcccgacctg
catctgcgcatggcgctctaccgccgtctcggggaaatcactgaactcaaagagatcgac
ggcttcggcgccgagatgatcgaccgcttcggcccgatgccgatcgaagtccagcacctg
ctgaagatcgtctacatcaagtcgctctgccgcaccgccaatgtcgaaaagctcgatgcc
ggcccgaagggtgtcgtcgtgcagttccgcaacaaggaattccccaacccggcaaacctc
gtcggttatatcggcaagcagggcacgatggcaaagatccgccccgatcacagcctgttc
ctgacccgcgacttgccgacgccggaaaaacgcctgcagggcgctgccgtcatcatgacg
cagctggccgaattcgcgaaatag
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