Rhizobium ruizarguesonis: J3P73_17540
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Entry
J3P73_17540 CDS
T07270
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
rrg
Rhizobium ruizarguesonis
Pathway
rrg02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
rrg00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
J3P73_17540 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rrg03021
]
J3P73_17540 (rpoD)
Transcription machinery [BR:
rrg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
J3P73_17540 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
DUF5856
Phage_DsbA
DUF4351
Imm3
DUF3106
Motif
Other DBs
NCBI-ProteinID:
QSY99634
LinkDB
All DBs
Position
complement(3525901..3527958)
Genome browser
AA seq
685 aa
AA seq
DB search
MATKVKENEDAEVERDGASDGPLLDLSDDAVKKMIKAAKKRGYVTMDELNAVLPSEEVTS
EQIEDTMSMLSDMGINVIEDEEAEEAGASGGSDDDDAGGDEESEGGELAPSSGTALATAK
KKEPTDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMIAGLCESPLTFQALII
WRDELNEGTTLLREIIDLETTYSGPEAKAAPQFQSPEKIEADRKLAEEKEKTRRARSGDD
DITDVGGEGLPPEEEEEDEDESNLSLAAMEAELRPQVMETLDTIAETYKKLRKLQDQQVE
QRLSASGTLSTAQERRYKELKDELIKAVKSLSLNQNRIDALVEQLYDINKRLVSNEGRLL
RLAESYGVKRDSFLEQYQGAELDPNWMKSIGNLAARGWKEFARGENTTIRDIRQEIQNLA
TETGISISEFRRIVHMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEG
NIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSR
QMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPVGDEEDSHLGDFIEDKNA
LLPIDAAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIR
QIEAKALRKLKHPSRSRKLRSFLDS
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atggcaaccaaggtcaaagagaacgaagacgcggaagtcgaacgcgacggcgcaagcgac
ggccctcttctcgatctttccgacgacgcggtcaagaagatgatcaaagccgccaagaag
cgcggctatgtgaccatggacgagctcaacgcggtcctgccgtccgaagaagtgacgtcc
gagcagatcgaagacacgatgtcgatgctgtccgacatgggcatcaacgtcatcgaagac
gaggaagccgaggaagccggtgcttccggcggcagcgatgacgacgacgccggcggcgac
gaggagagcgaaggcggcgaactcgcgccttcgagcggcacggcgctggcgaccgccaag
aaaaaagaaccgaccgaccgtaccgacgatccggttcgcatgtacctgcgcgagatgggc
tcggtggagcttctttcccgcgagggcgaaatcgcgatcgccaagcggatcgaggccggc
cgcgagacgatgatcgcgggtctctgtgagagcccgctgaccttccaggcgctgatcatc
tggcgcgacgaactcaacgaaggcacgacgctgctgcgcgagatcattgatctcgaaacg
acctattccggccctgaagccaaggctgcgccgcagttccagagccccgagaagatcgag
gccgatcgcaagctcgcagaagagaaggaaaagacccgtcgcgcccgctccggtgacgac
gacattaccgatgtcggcggcgaaggcctgcctcccgaagaggaggaagaggacgaggac
gaatccaacctttcgctggcggcgatggaagccgagcttcgcccgcaggtgatggagacg
ctggatacgatcgccgagacctacaagaagttgcgcaagctgcaggaccagcaggtcgag
cagcggctgtcggcttccggcacgctgtccacggcccaggagcgccgctacaaggaactc
aaggatgagctcatcaaggccgtcaaatctctgtccttgaaccagaaccgcatcgacgcc
ctggtcgagcagctctacgacatcaacaagcgcctcgtttccaacgagggccgcctgctg
cgtctggccgaatcctacggcgtcaagcgcgactccttcctggagcagtatcagggcgcc
gaacttgatccgaactggatgaagtcgatcggcaatctggccgctcgcggctggaaggaa
ttcgccaggggcgaaaacacgacgatccgcgacattcgccaggaaatccagaatctggcg
accgagactggtatctcgatctcggaattccgccgcatcgtgcatatggtgcagaagggc
gagcgcgaagcgcgcatcgccaagaaggaaatggttgaagcgaaccttcgcctcgtcatc
tccatcgccaagaaatacacgaaccgcggcctgcagttcctcgacctcattcaggaaggc
aatatcggcctgatgaaagcggtcgacaagttcgaataccgccgcggttacaagttctcg
acttatgcgacatggtggatccgtcaggcgatcacccgttcgatcgccgaccaggcccgc
acgatccgcattccggtgcacatgatcgagacgatcaacaagatcgtccgcacatcgcgc
cagatgctgcacgagatcggccgcgagccgacgccggaagaactggccgaaaagctggcc
atgccgctcgaaaaggtccgcaaggtcctgaagatcgccaaggagccgatctcgctcgaa
accccggtgggcgacgaagaggattcgcatctcggcgatttcatcgaggacaagaacgcg
ctgctgccgatcgacgccgccatccaggcgaacctgcgcgagacgacgacccgtgttctc
gcctcgctgacgccgcgcgaggaacgtgttctgcgcatgcgcttcggcatcggcatgaac
accgaccacacgctcgaagaagtcggtcagcaattctcggtcactcgcgaacgtatccgc
cagatcgaggcgaaggcgctgcgcaagctgaagcatccgagccgctccagaaagctgaga
agcttcctcgacagctaa
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