Rhizobium ruizarguesonis: J3P73_28900
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Entry
J3P73_28900 CDS
T07270
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rrg
Rhizobium ruizarguesonis
Pathway
rrg03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rrg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
J3P73_28900 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rrg03400
]
J3P73_28900 (ligD)
Enzymes [BR:
rrg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
J3P73_28900 (ligD)
DNA repair and recombination proteins [BR:
rrg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
J3P73_28900 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QSZ04611
LinkDB
All DBs
Position
p2:186034..187080
Genome browser
AA seq
348 aa
AA seq
DB search
MTKPPRKPSKPLLGEADAPLRSRPRRRRDPAQPNLPLDPMPARIEPCLALPKGRPPKGDD
WVFEIKWDGYRLAVHIESTGVRILTRGGHDWTSRFPAIERAAKELPVATAILDGEAVVLD
DQGRPDFGLLQQSLGGRGGKERSSTALFMTFDLLYFDGHDLRNSELGMRRHLLEDLVPAE
GQGDIRLSEEIEADGDQLLASACQHGLEGIIAKRRDSPYRSGRLGDWLKIKCVQSDSFVI
VGFERSTVARAGIGRLLLAARKGKELVYVGGVGTGFNQRNAYELREKLDGLITSTPAASV
DRKRAIFVKPKLIAEIEYRAWTDDGKLRHAAFKGLREEQDNAEGYGLE
NT seq
1047 nt
NT seq
+upstream
nt +downstream
nt
atgacaaagccgcctcgcaagccttccaagccgttgctcggtgaggccgacgcgccgctc
cgcagccggccgcgccgtcgccgagatcctgcgcagcccaatctccccttggaccctatg
cccgcgcgtatcgagccgtgccttgcgctgccaaagggcaggccgccgaagggcgacgat
tgggttttcgagatcaaatgggatggctatcgcctggcggttcatatcgagtctacaggc
gtgcgaatcctgacgcggggaggccacgattggacgtcccggtttcctgcgatcgaaagg
gcggcgaaagagctccccgtcgccacggcgatccttgatggcgaggccgtggttctcgac
gatcagggccggccggatttcggcctgctgcaacaatcgctgggcggtcgcggcggcaag
gagaggtcaagcacggcgctcttcatgaccttcgatctgctctatttcgatggtcatgat
ctgaggaattcggaactcggcatgcgccggcatctgctcgaggatctggtgccggccgaa
gggcagggcgatatccggctttccgaggagatcgaggcagacggtgatcagttgctggcg
agcgcctgccagcatgggcttgagggcatcatcgccaagcggcgtgactcgccctatcgt
tccggccggctcggcgactggctgaaaatcaaatgcgtgcagagcgacagctttgtgatc
gtcggttttgaacgatccacggtcgcgcgtgccgggatcggtcggcttctgcttgccgcg
cgcaagggcaaggagctggtctacgtcggcggggttgggactggcttcaaccagcgtaac
gcttatgagcttcgtgagaagctcgatggcctcatcacatctacgccggctgcctccgtc
gatcgcaaaagagcaattttcgtcaagccaaagctcatcgccgagatcgaataccgggct
tggacggatgacgggaagctgcggcatgcggcctttaaggggctgcgggaggagcaggac
aacgcggagggttatggcctggaataa
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