Rickettsia rickettsii Hauke: RPM_05760
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Entry
RPM_05760 CDS
T01723
Name
(GenBank) formamidopyrimidine/5-formyluracil/5-hydroxymethyluracil DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
rrh
Rickettsia rickettsii Hauke
Pathway
rrh03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rrh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RPM_05760
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rrh03400
]
RPM_05760
Enzymes [BR:
rrh01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
RPM_05760
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
RPM_05760
DNA repair and recombination proteins [BR:
rrh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
RPM_05760
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Ribosomal_S13
HTTM
IBR_1
Motif
Other DBs
NCBI-ProteinID:
AFB30662
LinkDB
All DBs
Position
971578..972399
Genome browser
AA seq
273 aa
AA seq
DB search
MPELPEVETLKNSLKDKLIGLIIENVELKRDNLRYKLSPLLATEILNTNILDVRRRAKYL
IIDFNNDYSLIVHLGMSGRFTLQSANYKTQKHDHVIFDLSNGEKLIFNDTRRFGMIYSFK
TDLLEKEFFNDLGIEPFSDLLTLEYLKDKLQTKKIPIKNLIMDNRVIVGVGNIYASESLH
LARIHPDKSGNDLRDDEIENLIKAIRDVLTKAITAGGTTLKDFVNGDNKPGYFTKQLKVY
GREGQSCLSCSSTIIKIKHSGRSTFYCKTCQYS
NT seq
822 nt
NT seq
+upstream
nt +downstream
nt
atgccggaacttcctgaagtagaaactcttaaaaactctctaaaagataagctaatcggg
ctcattatagaaaatgtagagttaaaaagagataatttacgttataagctatccccgctt
ttagctacagaaatcttaaatactaatatactggatgttaggcgtcgtgcaaaatactta
attatagattttaataatgattattctttaatagttcatctaggcatgagcggcagattt
actctgcaatctgctaattataaaactcaaaaacacgatcatgtgatttttgatttaagt
aacggcgaaaagttaattttcaacgatactagacgattcggtatgatttatagttttaag
actgatctcttagaaaaagaattttttaatgatttaggcatagagcctttttctgattta
ttgacgttagaatatctaaaagataagctacaaactaaaaaaataccaataaaaaacttg
attatggataatagagttatagtcggagtcggtaatatctatgcttccgaaagtctgcat
ttagctagaattcatccggataaatcaggtaacgatttaagggatgatgaaatagaaaat
ttaattaaagcgattagagatgtgttaactaaagctataactgccggcggtactactctt
aaagattttgtaaacggcgataacaaacctggttattttactaagcaacttaaggtttac
ggtagagagggacaaagttgtttaagctgctctagcactattatcaagataaagcattca
ggcagaagtactttttattgtaaaacttgccaatatagttaa
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