Rhizobium rhododendri: PR018_04965
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Entry
PR018_04965 CDS
T08971
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
rrho
Rhizobium rhododendri
Brite
KEGG Orthology (KO) [BR:
rrho00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rrho03032
]
PR018_04965 (topA)
03400 DNA repair and recombination proteins [BR:
rrho03400
]
PR018_04965 (topA)
Enzymes [BR:
rrho01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
PR018_04965 (topA)
DNA replication proteins [BR:
rrho03032
]
Prokaryotic type
DNA Topoisomerases
PR018_04965 (topA)
DNA repair and recombination proteins [BR:
rrho03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PR018_04965 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
Motif
Other DBs
NCBI-ProteinID:
WFS23861
LinkDB
All DBs
Position
complement(1000163..1002856)
Genome browser
AA seq
897 aa
AA seq
DB search
MNVVVVESPAKAKTINKYLGPNYKVLASFGHVRDLPAKDGSVLPDQDFEMLWEVDAASAK
RMKDITDAMKTADGLILATDPDREGEAISWHVLDLLNKKKVIGTKKVQRVVFNAITKKSV
LDAMANPRDIDGPLVDAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVSLRLVCDR
ESEIERFVSEEYWNLSALLKTPRGDEFEARLTVADGKRLQARSIANGEQAGNLKTLLEGA
SYVVDTVEAKPVKRNPSPPFTTSTLQQAASSKLGFSASRTMQVAQRLYEGIDIGGETVGL
ITYMRTDGVQMAPEAIDAARSAIGSQFGNRYLPEKARFYSSKAKNAQEAHEAVRPTDFER
IPDHLRSALDADQLRLYDLIWKRAIASQMASAEIERTTVEILATNGGDKAGLRAVGSVIR
FDGFIAAYTDQKEDGEQSDDGEEDGRLPEINARENLAKQKINSTQHFTEPPPRYSEATLI
KKMEELGIGRPSTYAATLATLRDRDYVTIDKRKLVPQAKGRLVTAFLENFFTRYVEYDFT
ADLEEKLDRISAGELNWKDVLREFWTAFFAQINDTKELRVTNVLDALNEALAPLVFPTRE
DGSDPRICQVCGTGNLSLKLGKYGAFVGCSNYPDCNFTRQLSSEGGTDAESTGLSEPKAL
GKDPVTEEELTLRSGRFGPYIQRGEGKEAKRSSLPKGWKPEDIDYEKAMALIALPRDIGK
HPESGKMISSGLGRYGPFLLHDGSYANLETIEDVFTVGLNRAVTVLADKQAKGPSGRGTP
AALKDLGDHPDGGGKITVRDGKYGPYVNWGKVNATLPKGKDPQSVSVEEALALIVEKAGK
PAKPKAAAKAKAAPKAKAAAKTKTAAASAKTTKTAAKPAAKAKAKPAAKKTVKKAAE
NT seq
2694 nt
NT seq
+upstream
nt +downstream
nt
atgaatgttgtagtggtagaatcgcctgccaaggccaagacgatcaacaaatatctggga
cccaactacaaggtcctggcgtctttcggtcacgtgcgcgatctgcccgccaaggatggt
tcggttttgcccgaccaggacttcgagatgctctgggaagtcgacgcggcctcggccaag
cgcatgaaggatatcacggacgccatgaagacggccgatggcctgatcctcgcgaccgac
cctgatcgcgaaggtgaagcgatctcctggcatgtgctcgaccttctcaacaagaagaag
gtgatcggcaccaagaaggtgcagcgcgtcgtcttcaacgccatcaccaagaaatccgtt
ctcgacgccatggccaacccgcgcgatatcgacggaccgctggtcgatgcctatctggcg
cgccgggccctcgactatctcgtcggcttcaacctgtcgccggtgctatggcgcaagctg
cccggcgcccgctctgccggccgcgtgcagtctgtttccctgcgtctggtttgcgaccgc
gaatccgaaatcgagcgctttgtctccgaagaatactggaacctctcggcgctgctgaag
acgccgcgcggcgatgaattcgaagcccgcctgacggtcgccgacggcaagcggctgcag
gcccgctcgattgccaacggcgaacaggccggcaatctcaagacattgctcgaaggcgcc
agctacgtcgtcgacaccgtcgaggcgaagcccgtcaagcgcaatccttcgccgccgttc
accacctcgacgctgcagcaggcggcttcttccaagctcggcttctccgcatcgcgtacc
atgcaggtcgcgcagcggctgtatgaaggtatcgacatcggtggcgagaccgtgggtctt
attacttatatgcgtaccgatggcgtgcagatggcgccggaggcgatcgatgcggcgcgc
agcgccatcggcagccagttcggcaatcgctacctgccggaaaaggcccgtttctattcg
agcaaggcgaagaatgcacaggaagcgcacgaggccgtgcgtcctactgacttcgaacgc
attcccgatcacctgcgcagcgccctcgatgccgaccagcttcgtctctacgacctgatt
tggaaacgggcgattgccagccagatggcgtctgccgagatcgagcggacgaccgtcgag
atcctggcgaccaatggtggcgacaaagccggcctgcgggccgttggctccgtcatccgc
ttcgatggcttcatcgccgcctataccgaccagaaggaagacggcgagcagagcgatgat
ggcgaagaggacggccgcctgccggagatcaacgcccgcgagaacctcgccaagcagaag
atcaactcgacgcagcatttcaccgaaccgccaccgcgctattcggaagcaacacttatc
aagaagatggaagagctcggcatcggccggccttccacctatgccgcaacgctggcaacc
ttgcgcgaccgcgactatgtgacgatcgacaagcgcaagctggtgccgcaggccaagggc
cggctggtcaccgcctttctcgaaaacttcttcacccgctacgtcgaatacgacttcacc
gccgacctcgaggaaaagctcgaccgaatctcggccggcgaactgaactggaaggacgtg
ttgcgcgaattctggacggctttcttcgcccagatcaacgacaccaaggaactgcgcgtc
accaacgtcctcgatgcgctgaacgaggcgctggcgccgctggtgtttccgacccgcgaa
gacggcagcgatccgcgcatctgccaggtctgcggcaccggcaacctgtcgctgaagctc
ggcaagtacggcgcctttgttggctgctcgaactatccggactgcaatttcacccgccag
ctctcgtcggaaggcggcacggatgcggaatcgaccggcctcagcgagccgaaggcgctc
ggcaaggatccggtgaccgaggaagagctgacactgcgctccggtcgcttcggcccctac
atccagcgtggagagggcaaggaagccaagcgctcgtcgctgccgaagggttggaagccc
gaggatatcgattacgagaaggcgatggcactgatcgcgctgccgcgcgatatcggcaag
catccggaaagcggcaagatgatctcgtccggcctcggccgctacgggccattcctgctg
catgacggctcctacgccaacctcgagaccatcgaggacgtattcaccgtcggtctcaac
cgcgccgttacggtgctcgccgacaagcaggccaagggcccaagcggtcgcggcacgccg
gcagcgttgaaggaccttggcgaccatccggacggtggcggcaagatcaccgtgcgcgac
ggcaagtatgggccctatgtcaactggggcaaggtcaatgcgacgttgccgaagggcaag
gatccgcagagcgtcagtgtcgaggaagcgcttgccctgatcgtcgagaaggccggcaag
cctgccaagccgaaggctgccgccaaggccaaggccgcaccgaaggcgaaggcagcagcg
aagacgaagaccgctgccgcatcggcaaagacgaccaagaccgccgccaagccggcagcc
aaggccaaggccaagccagccgccaagaagacagtgaagaaggcagcagagtga
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