Rhizobium rhododendri: PR018_07980
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Entry
PR018_07980 CDS
T08971
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
rrho
Rhizobium rhododendri
Pathway
rrho03410
Base excision repair
rrho03430
Mismatch repair
rrho03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rrho00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PR018_07980 (recJ)
03430 Mismatch repair
PR018_07980 (recJ)
03440 Homologous recombination
PR018_07980 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rrho03400
]
PR018_07980 (recJ)
DNA repair and recombination proteins [BR:
rrho03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
PR018_07980 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
PR018_07980 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PR018_07980 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Peripla_BP_4
Motif
Other DBs
NCBI-ProteinID:
WFS24421
LinkDB
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Position
complement(1613920..1615728)
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AA seq
602 aa
AA seq
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MGPIEAADPVQRAFLGVERSAGGNRWVSRLDQAGQNRALAMAQTHGMADLIARVLAGRGV
GLDEAMAFLDPTIRGLMPDPHRLTDCEKAAERLLQAVKTGESVAVFGDYDVDGAASSALM
YKFLRHFDVPATIYIPDRIFEGYGPNPTAINQLIDNGARLIVTVDCGSTSFESLDAAKAR
NIDVVVIDHHQVGDALPHCHALVNPNREDDLSGQGHLCAAGVVFLVLVATLRLLRQSGDL
RAGNIDLLAWLDIVALATVCDVVPLKGLNRAYVVKGLLAARHQSNPGLAALFRKAGLGGP
VTPYHFGFMIGPRINAGGRIGDAALGSRLLTLEDASEADVIAERLDELNRERQAMEAVML
KEAEAEALAEYGNGEGAAVIVTAHDNWHPGIVGLISSRLKDSFRRPAFAIAFDSQGKGTG
SGRSISGFDMGKMVRAAVDAGLLVKGGGHAMAAGLTVERANLGKLRTFFAERAEKQVFGL
VADSTLKIDGALGASGATVELVDQLETAGPFGSGHPQPIFAIPSHRLRDSRLVGQNHIKV
TLEAMDGGRLEGIAFRAAETPLGDLLLGSRGAQLHVAGTLGADHWQGARRVQLRVTDAAK
AP
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atgggaccgatcgaagcggcagacccggtacagcgggcatttctgggggtggaacgttcg
gccggcggcaatcgctgggtgtcgcggctcgaccaggcgggccagaaccgggcgctggcg
atggcccagacccacgggatggcggacctgatcgcccgcgtgctcgccggccgtggcgtc
ggtctcgacgaggcgatggcctttctcgaccccacaattcgcggcctgatgcccgacccg
caccggctgacggattgcgagaaggctgccgagcggctgctgcaggcggtcaagaccggc
gagagtgtcgctgtattcggcgactacgatgtcgacggtgcggcctcctcggcgctgatg
tacaaattcctgcggcacttcgacgtgcccgcgaccatctatatccccgaccggatcttc
gaaggctacggcccgaacccgacagcaatcaaccagctgatcgacaacggtgcccggctg
atcgtcacagtcgactgcggctcgaccagcttcgaatcgctggatgctgccaaggcccgg
aacatcgacgtcgttgtcatcgaccaccaccaggtcggcgacgcgctgccgcattgccat
gcgctggtcaatccgaaccgggaggacgatctgtcggggcagggccatctctgcgctgcc
ggcgtggtcttcctggtgctggtggcgacgttgcggctgctgcgccaatccggcgatctc
agggcaggcaatatcgacctgctggcctggctcgatatcgtagcgcttgccacagtctgc
gacgtggtgccgctgaaggggctgaaccgcgcctatgtggtcaagggcctgctggccgct
cgccatcagtccaatccggggctggcggcgctgttccgcaaggcggggctcggcggcccc
gttacgccctaccatttcggcttcatgatcggcccgcgcatcaacgccggcggacgtatc
ggcgatgccgcgctcggtagccggctactgacattggaggatgcatcggaagccgacgtc
attgccgagaggctcgacgagctgaaccgcgagcgacaggcgatggaagccgtcatgctg
aaggaggccgaggcggaagcgctggccgaatatggcaacggcgagggcgctgcggtcatc
gtcaccgcccatgacaactggcatccgggcatcgtcgggctgatatcgtcgcgtctcaag
gattccttccgccggccggcctttgccatcgcctttgattcgcagggcaagggcaccggc
tccggccgttcgatcagcggcttcgacatgggcaagatggtgcgcgccgccgtcgatgcc
gggctgctcgtcaagggcggcggtcatgcgatggctgccggcctgacggtcgaacgcgcc
aacctcggcaagctgcggactttctttgccgagcgcgccgaaaaacaggtgttcgggctc
gtcgccgattcgacgttgaagatcgacggggcgctcggggcgagcggcgcaacggtcgag
cttgtcgatcagctggaaacggcgggaccctttggctccggccacccgcagccgatcttt
gccatccccagccatcgcctgcgcgattcgcgactggtcgggcaaaaccatatcaaggtg
acgctggaagcgatggatggcggccgtctggaaggcattgcgttccgcgccgcggaaacg
ccgctcggcgacctgctgctcggttcacgtggggcacagctgcacgtcgcgggaacgctg
ggtgccgaccactggcaaggcgcccgccgcgtccagctccgcgtcaccgatgccgccaag
gcgccgtga
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