Rhizobium rhododendri: PR018_09605
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Entry
PR018_09605 CDS
T08971
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
rrho
Rhizobium rhododendri
Pathway
rrho03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rrho00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PR018_09605 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rrho03019
]
PR018_09605 (recQ)
03400 DNA repair and recombination proteins [BR:
rrho03400
]
PR018_09605 (recQ)
Enzymes [BR:
rrho01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PR018_09605 (recQ)
Messenger RNA biogenesis [BR:
rrho03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PR018_09605 (recQ)
DNA repair and recombination proteins [BR:
rrho03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PR018_09605 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
Phage_portal
IF2_N
AAA_30
Motif
Other DBs
NCBI-ProteinID:
WFS21447
UniProt:
A0ABY8ICG9
LinkDB
All DBs
Position
complement(1962152..1964146)
Genome browser
AA seq
664 aa
AA seq
DB search
MSKPEKNDPRFSTDEALFGLEPPRDVFEPDQAAGWEPYGEPYAAPEPHTSRALPRSSAGQ
APLDVLKRIYGYPAFRGKQQQVVEHVVSGGDAVVLFPTGAGKSLCFQIPALCRNGIGIVV
SPLIALMRDQVQALKQLGVNAAALNSSITREEAQAIYRDIRNGTLELLYMTPERILTDNF
RQTIGDAKIALFAIDEAHCVSQWGHDFRPEYRELGKLAEQFPGVPRIALTATADPHTRDD
IIARLQLDTAKIFSTSFDRPNIAYEIVERDQPRQQLLRFLSGHKGDSGIVYCLSRAKVED
TAEWLNGQGIRALAYHAGMDRAVRDANQDAFLKEEDLCLVATVAFGMGIDKPNVRYVAHL
DIPGSVEAYYQETGRAGRDGLPSNVWMAYGMADVIQRGKMIDEGASAPEIKRVERAKLNA
LLAICETSGCRRQAILAHFGESHAGNCGNCDTCLKPVETWDGTEAAIKALAAIYRTGERF
GAGHVIDVLTGNVNEKTQRFGHADMPVFGVGKDIPVRTWQSVFRQLLAAGLVSVDHTAYG
ALKLTPDAKAVFKKERSIQFRKDRPATAKSARRGAGASAASGGAPRTAGLSAADAALFEE
LRAERMKIAKTLGVPPYVVFPDTTLIAMASERPGSADEMLAISGVGQAKLERYGDAFLAV
IGRG
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagccggagaagaacgatccacggttttccaccgacgaggcgttgtttggcctc
gaaccgccgagggatgtcttcgagccggatcaagcggccggatgggagccctacggcgag
ccgtacgctgcgccagagccgcacacctcgcgggcgttaccgaggtcgtccgccgggcag
gcgccgctcgatgtgctgaagcggatctatggctatccggcctttcgcggcaagcagcag
caggtggtcgagcacgtcgtttccggcggcgatgcggtcgtgttgtttccgaccggcgcc
ggcaagtcgctgtgcttccagatcccggcgctctgccgcaacggcattggcattgtcgtc
tcgccgctgattgcgctgatgcgcgaccaggtgcaggcgctgaagcagctgggtgtcaac
gcggcagcgttgaattcgtcgatcacccgcgaagaggcgcaagccatctatcgcgacatc
cgcaacggcacgctcgaactgctctacatgacgcccgagcgcatccttaccgacaatttc
cgtcagaccatcggtgacgcgaagattgcgctgtttgccatcgacgaggcccattgtgtg
tcgcagtggggccatgatttccggccggaataccgcgaactcggcaagctcgccgaacag
tttccgggcgtgccgcgcatcgcgctgacggcgacggccgatcctcacacccgcgacgac
atcatcgcccggctgcagctcgacaccgcaaaaatcttctccaccagcttcgaccgcccc
aacatcgcctacgagatcgtcgagcgcgaccagccgcgccagcagctgctgcgctttctc
tccggccacaagggcgacagcggcatcgtctactgcctgtcgcgcgccaaggtcgaagac
accgccgaatggctgaacgggcagggcatcagggcactcgcctatcacgccggcatggac
cgggcggtgcgcgatgccaaccaggatgcatttttgaaggaggaagacctctgccttgtc
gccacggtcgccttcggcatgggcatcgacaaaccgaacgtgcgctatgtcgcccatctc
gacatcccgggctccgtcgaggcctattatcaggaaacgggacgcgccggccgcgatggc
ctgccgtccaacgtctggatggcctatggcatggccgacgtcatccagcgcggcaagatg
atcgacgaaggcgcgtcggcccccgaaatcaagcgggtggagcgcgccaagctcaacgcg
ctgctcgccatctgcgagacctccggctgccgccgccaggcgattcttgcccatttcggc
gagagccatgcggggaactgcggcaattgcgacacctgcctgaagccggtggaaacctgg
gacggcacggaggcggcgatcaaggcgctggccgccatctaccgcaccggcgaacgcttt
ggcgccggccacgtcatcgatgtgctcacaggcaatgtcaacgagaagacccagcgcttc
ggccatgccgacatgccggtcttcggcgtcggaaaggacatccccgtccgcacctggcaa
tccgtcttccgccagcttctcgccgccggcctcgtcagcgtcgatcataccgcctatggc
gcgctgaagctgacgccggatgccaaggccgtgttcaagaaggaacgcagcatccagttc
cgcaaggatcgcccggccacggccaagtccgcgaggcgcggtgccggcgcgagcgctgca
agcggcggcgcgccgaggacggccggcctgtcggcagcggatgcggcgctgttcgaggaa
ttgagggccgagcgcatgaagatcgccaagacgctgggcgtgccgccctatgtcgtgttt
ccggacacgacgctgatcgccatggccagcgaacggccgggcagtgcggacgagatgctg
gcgatctcgggcgtggggcaggcgaagctggagcgctatggggatgcgtttttggcggtg
attgggcgggggtga
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