Rhizobium rhododendri: PR018_09715
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Entry
PR018_09715 CDS
T08971
Name
(GenBank) UdgX family uracil-DNA binding protein
KO
K21929
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
rrho
Rhizobium rhododendri
Pathway
rrho03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rrho00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PR018_09715
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rrho03400
]
PR018_09715
Enzymes [BR:
rrho01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
PR018_09715
DNA repair and recombination proteins [BR:
rrho03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
PR018_09715
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4130
UDG
Motif
Other DBs
NCBI-ProteinID:
WFS24647
LinkDB
All DBs
Position
complement(1988851..1990359)
Genome browser
AA seq
502 aa
AA seq
DB search
MRRVTLKGRGDLAEWRDVARRLLAEGVLPEAIDWHEATLGGDLFGTAGERLLLEPTERPS
GCEAGVRPAGSSPVSVPPAFISLAEAVICHSDPGRFALLYRILFRLCSDRHLLGMVADVD
VHRALMLQKSVRRDCHKMTAFVRFKEVDSALALPRRRFVAWFEPDHHIVARSAPFFQRRF
NDMDWLIATPRGSAAWDGTQLTISDLPVEKPSLTDEADTLWRTYFSNIFNPARLKVKAMQ
AEMPKKYWKNLPEADLIPGLIAGAEASVLAMARRAATEPLPFHQRLQAAAAAEQMPVSAA
QAGSMEGLREAARQCTRCELHCHATQTVFGEGPVDASVMVVGEQPGDHEDLAGRPFVGPA
GKVFNQAIDDAGIDRTTLYVTNAVKHFKYELRGKRRIHQKPTMGEVRHCRWWLDGERALI
RPKLTVALGATALFALTDSRERLEDMRGRPVPLADGSNLFVTVHPSYLLRIPDAGRKAEE
LARFQAEIRSISRLVGQAEGAS
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
atgcgtcgcgtaacgctgaagggtaggggtgacttggccgaatggcgcgacgtggcgcgg
cggctgcttgcggaaggtgtgttgcctgaggccatcgactggcacgaggccacgttgggc
ggagacctgtttggcactgctggcgagcgcctgttgctggagccgacggagcgtccatca
ggttgcgaggcgggcgtcaggcctgcaggctcatcacccgtttccgtgcctccggccttc
atcagcctggcggaggccgtgatctgtcattccgatcccggtcgttttgcgctgctttac
cgcatcctgtttcgtctttgcagcgaccgccatctgctcggcatggtcgcggatgtcgat
gttcaccgggcgctgatgctgcagaagtctgtccgtcgggactgtcacaagatgaccgcc
tttgtgcgcttcaaggaggtggatagcgcgctggcattgccgcggcggcgcttcgttgcc
tggttcgaaccggatcaccatatcgtcgcccgcagcgcaccgttcttccagcgccggttc
aacgacatggactggctgatcgccacgccgcgcggctcggccgcctgggacggcacccaa
ttgacgatctccgatctgccggttgagaaaccatcgctgacagacgaggcggacacgctg
tggcgcacctatttcagcaatattttcaatcctgcacgattgaaggtgaaggccatgcag
gccgagatgccgaaaaaatattggaaaaacctgccggaggccgatctcattcccggtctt
atcgccggcgccgaggccagcgtgctggcgatggcaaggcgcgcggcaaccgagccgctg
ccgtttcaccagaggctgcaggcggccgcagctgccgagcaaatgcccgtatcggcggcg
caagcgggcagcatggaagggctgcgggaggcggcccgccaatgcacccgctgcgagttg
cactgccacgccacgcaaacggtgttcggtgaggggcctgtcgacgcatcggtgatggtg
gttggcgagcagccgggcgatcacgaggatcttgcaggccgcccgttcgttggtccggcc
ggcaaggtcttcaatcaggcgatcgacgatgccggcatagaccggacgacgctctacgtg
accaatgccgtcaagcatttcaaatacgaactgcggggcaagcggcgcatccaccagaag
ccgacgatgggcgaggtccgccactgccgctggtggctggatggagaacgggccctgatc
cgcccgaaactgaccgtggcactcggcgctacggcgctgttcgcactaaccgacagccgg
gagaggctcgaggatatgaggggccgtccggttccgctggcagatggcagcaacctgttt
gtcaccgtccatccgtcctatctgctgcgcattcccgacgcggggcgcaaggccgaggaa
ctggcgcggtttcaagcggaaattcgttccataagccgtctcgtagggcaggcggagggc
gcatcttga
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