Rhizobium rhododendri: PR018_16400
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Entry
PR018_16400 CDS
T08971
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
rrho
Rhizobium rhododendri
Pathway
rrho03030
DNA replication
rrho03410
Base excision repair
rrho03420
Nucleotide excision repair
rrho03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rrho00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PR018_16400 (polA)
03410 Base excision repair
PR018_16400 (polA)
03420 Nucleotide excision repair
PR018_16400 (polA)
03440 Homologous recombination
PR018_16400 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rrho03032
]
PR018_16400 (polA)
03400 DNA repair and recombination proteins [BR:
rrho03400
]
PR018_16400 (polA)
Enzymes [BR:
rrho01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PR018_16400 (polA)
DNA replication proteins [BR:
rrho03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PR018_16400 (polA)
DNA repair and recombination proteins [BR:
rrho03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
PR018_16400 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PR018_16400 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_pol_A_exo1
DNA_polI_exo1
HHH_5
HHH_2
HHH
IMS_HHH
Transposase_20
Motif
Other DBs
NCBI-ProteinID:
WFS24724
LinkDB
All DBs
Position
3389696..3392689
Genome browser
AA seq
997 aa
AA seq
DB search
MKNGDHLFLVDGSGFIFRAFHAIPPLNRKSDGLPVNAVSGFCNMLWKLLRDARNTDVGVT
PTHFAVIFDYSSKTFRNDLYHLYKANRSAPPEDLVPQFGLIREATRAFNLPCIETEGFEA
DDIIATYARLAEATGADVTIISSDKDLMQLVTPNVHMYDAMKDKQIGIPDVVEKWGVAPE
KMIDLQALTGDSTDNVPGIPGIGPKTAAQLLEEFGDLETLLSRAGEIKQQKRRESIIANA
DLARLSRQLVELRTDVPLDVPLEDLTLEPQDGPKLIAFLKAMEFTSLTRRVADATGANAA
GIEAAVVAVELVAEAHGPDMDTLASATEGERSEETIKSSPTDPLAVEAPHRGATPTDLAR
SRAESFAAAKLDASAYVTIRDLPTLSNWIAACRETGLVAFDTETTSIDVMQADLVGFSLA
YADPADASGLTIHAAYVPLAHKTGSEDLFSDGVKLAPDQIPMDDALALLKGLLEDPSVLK
VAQNLKYDYLLMKRYGIITRGFDDTMLMSYVLDAGATTHGMDTLSERWLGHKPIAFKDVA
GSGKSLVTFDRVAIDKATAYAAEDADVTLRLWMVLKPRLAAQKLTSVYERLERPLVPVLA
RMEERGITVDRQILSRLSGELAQKAAAFEDEIYELAGERFNIGSPKQLGDILFGKMGLAG
GGKTKTGQWSTSASVLEDLAAEGLPLPRKIVDWRQLTKLKSTYTDALPGYIHPLTKRVHT
SYSLAATTTGRLSSSEPNLQNIPVRTVEGRKIRTAFVSTPGHKLLSADYSQIELRVLAHV
ANIPQLTQAFSDGVDIHAMTASEMFGVPVEGMPSDVRRRAKAINFGIIYGISAFGLANQL
SIERSEAGEYIKRYFERFPGIKDYMEATKAYARDKGYVETIFGRRIHYPEIRSSNPSMRA
FNERAAINAPIQGSAADVIRRAMIQIEPALAEAGLGERVRMLLQVHDELIFEVEDGDVER
TQPVIVSVMENAAMPAVEMSVPLKVDARAADNWDEAH
NT seq
2994 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaatggtgatcatctcttcctcgtcgatggctcgggcttcattttccgcgccttc
cacgccattccgccgctcaaccgcaaatccgatggtttgccggtgaatgccgtgtcggga
ttttgcaacatgctgtggaagttgctgcgtgacgcgcgcaacaccgatgtcggggtgacg
cccacccattttgccgtcatcttcgactattcctcaaagacgttccgcaacgatctatac
catctctacaaagccaaccgctcggcaccgcccgaggacctggtgccgcagttcggtctg
atccgcgaggcgacccgcgcctttaatcttccgtgcatcgaaactgaaggtttcgaggcc
gacgacatcatcgccacctatgcgcggctggcagaggccaccggcgccgatgtcaccatc
atctcgtccgacaaggacctgatgcagttggtgacgcccaatgtgcatatgtacgatgcc
atgaaggacaagcagatcggcattcccgatgtcgtcgagaaatggggcgtcgcgcctgaa
aagatgatcgacctgcaggcgctgaccggtgattccaccgacaacgtgccgggcattccg
gggatcggtccgaagaccgcagcccagcttctggaagaattcggcgatctcgaaacgctg
ctgtcgcgggccggcgagatcaagcagcagaaacgccgcgaaagtatcattgccaatgcc
gatctcgcacggctgtcgcgccagctggtcgaactgcgcaccgacgtaccgctcgacgta
cccctcgaggatctgacactcgagccgcaggatggcccgaaactcatcgccttcctgaag
gccatggaattcacctcgctgacccgccgcgtcgccgatgcgaccggcgcgaatgctgca
ggcatcgaggcggcggtcgtcgcggtcgagctggttgccgaggctcacggccccgacatg
gacacgctcgcctccgccaccgagggggagcgctccgaagagacgatcaagtcgtcgccc
accgacccgctggcagtcgaggcgccgcatcggggtgcaacgcctaccgatcttgccagg
agccgggcagaaagtttcgccgccgccaaactcgatgcctctgcctatgtcaccatccga
gacctcccaacgctctcgaactggattgccgcctgtcgcgaaaccggcctggtcgccttc
gataccgagaccacctcgatcgatgtcatgcaggcggatctggtcggtttctcgcttgcc
tacgccgatcccgccgatgcgtcgggcctcaccatccacgccgcgtatgtgccgcttgcc
cacaagaccggcagcgaggatctgttcagcgacggcgtcaagctggcgccggaccagata
cccatggacgatgcactggccctgctgaagggactgctggaggacccgtccgtcctcaag
gtagcccagaacctcaaatacgattacctgctgatgaagcgctatggcatcatcacccgg
gggtttgacgacaccatgctgatgtcctacgtgctcgatgccggtgccacgacccatggc
atggacacgctgtccgagcgctggctcgggcacaagcccatcgccttcaaggatgtcgcc
ggcagcggcaagtcgctcgtcaccttcgaccgtgtcgccatcgacaaggccacggcctat
gccgccgaggatgccgatgtgacgctgcggctgtggatggtgctgaagccgcgcctcgcc
gcgcagaaactgacctcggtctatgagcgcctggagcggccgctcgtgccggtgctcgcc
cgcatggaagagcgcggcatcaccgtcgatcgccagatcctgtcacggctctccggcgaa
cttgcccagaaggcggcagccttcgaggacgagatctatgaactggccggcgagcgcttc
aacatcggctcgcccaagcagctcggcgatatcctgttcgggaagatgggccttgccggt
ggcggcaagaccaagaccggacagtggtccacctcggcaagcgtgctcgaggatctggcc
gccgagggcctgccgctgccgcgcaagattgtcgactggcgccagttgaccaagctgaag
tcgacctacaccgacgcgctgccaggctacatccaccccctgaccaaacgcgtccacaca
tcctactcgctggccgcgaccaccaccggccggctatcctcgtccgagccgaacctgcaa
aatattccggtgcgcaccgtcgaaggccgcaagatccgcacggctttcgtttcgacaccc
ggccacaagctgctgtcggccgattacagccagatcgagctgcgcgtgttggcccatgtc
gccaacattccgcaactgacccaggcgttttccgacggcgtggacatccatgcgatgacg
gcctccgagatgttcggtgtgccggtcgagggcatgccgtcggacgtgcgccgtcgcgcc
aaggcgatcaacttcggcatcatttacggcatctcagccttcggccttgccaaccagctt
tcaatcgagcgctccgaggccggtgaatacatcaagcgctacttcgagcgcttccccggc
atcaaggactatatggaggccaccaaggcctatgcccgtgacaagggctatgtcgagacc
atcttcggccgccgcatccattatccggaaattcgctcgtccaatccttcgatgcgcgct
ttcaacgaacgcgccgccatcaacgcaccgatccagggctcggccgcagacgttatcagg
cgtgcgatgatccagatcgagccggcattggctgaagccgggctcggcgagcgcgtccgc
atgctgctgcaggtccatgacgaattgattttcgaagtggaggatggcgatgtcgagcgg
acccagccggtcatcgtctccgtcatggaaaatgctgccatgccggccgtcgagatgagc
gtgccgcttaaggtcgatgcgcgtgctgccgacaactgggacgaagcccactag
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