Rhizobium rhododendri: PR018_17710
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Entry
PR018_17710 CDS
T08971
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
rrho
Rhizobium rhododendri
Brite
KEGG Orthology (KO) [BR:
rrho00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rrho03032
]
PR018_17710
03400 DNA repair and recombination proteins [BR:
rrho03400
]
PR018_17710
Enzymes [BR:
rrho01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
PR018_17710
DNA replication proteins [BR:
rrho03032
]
Prokaryotic type
DNA Topoisomerases
PR018_17710
DNA repair and recombination proteins [BR:
rrho03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PR018_17710
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
WFS22924
LinkDB
All DBs
Position
3679005..3680039
Genome browser
AA seq
344 aa
AA seq
DB search
MSEISITDLGLVYVNDSEPGIRRHRRGTGFSYRLPDGSVLNDAVHRKRIASLGLPPAYDN
VWICLQENGHLQATGMDARGRKQYRYHKEWQSHRSVEKFHQLIEFGQALPKMRRAVLRHL
DGGMDDIHGVLAALATLLDEAHLRVGNQSYARENGTYGATTLLKRHLKLNGGRIELRFIA
KGGKRVQRSLKHPRLQRMLEEIADLPGRQLFAWKDEHGLLRPIDSGRLNLYLGEISGLSV
SAKTFRTWGGSLAAFTSARNALEKGMRPTVKEMSEASAEVLHNTPAISRSSYIHPSIIAL
ADKQHSLDEEVFAPLVEPLRGLRADENRLLDFLIRRSEESSPSA
NT seq
1035 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaaatatcgatcacagatcttggtcttgtgtatgtgaacgacagcgaacctggt
atacgccgccatcgaagaggcacaggcttttcctacaggctgccggacggcagcgtgctc
aacgacgcggtccatcgcaagcggatcgcgtcgctcggtcttccgcccgcctatgacaat
gtctggatctgcctgcaggaaaacggccacctgcaggcaaccggcatggatgcgcgcgga
cgcaagcagtaccgctaccacaaggagtggcagtcgcaccggagcgtggagaaattccac
cagctcatcgaattcggtcaggcattaccgaaaatgcgccgcgccgtcctgcgtcacctc
gatggtggcatggatgacatccacggtgtccttgctgcgttggccacgttgctcgacgag
gcccatctgcgcgtgggcaatcagagctatgcgcgcgaaaacggcacctatggcgcgacc
actcttctgaaacgccaccttaaactcaacggcgggcgtatcgagcttcggttcatcgcc
aagggtggcaagagggtgcagcggagcctgaaacatccgcgtctgcaaaggatgctggaa
gagatcgccgatctgcccggtcgccagttgtttgcttggaaagacgaacacgggttgctg
agaccaatcgattcgggccgcctcaatctttacctcggagaaatctccggcctttccgtc
tcggcaaagacatttcgaacctggggtggctcgctcgccgccttcacctccgcccgcaat
gcgctggaaaaaggcatgcggccgacggtcaaggaaatgtccgaggcgtctgccgaggtg
ctccacaacacgccggcaatttcacgttcgagctacatacatccgtcgataattgctctt
gcagacaagcagcattctctcgacgaagaggtcttcgcgcccctcgtcgaacccctgcgt
ggtcttcgggctgacgaaaaccgattgctcgattttctgatcaggcgcagtgaagagagc
agtccatcggcatag
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