Rhizobium rhododendri: PR018_26810
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Entry
PR018_26810 CDS
T08971
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rrho
Rhizobium rhododendri
Pathway
rrho03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rrho00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PR018_26810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rrho03019
]
PR018_26810
03009 Ribosome biogenesis [BR:
rrho03009
]
PR018_26810
Enzymes [BR:
rrho01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PR018_26810
Messenger RNA biogenesis [BR:
rrho03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PR018_26810
Ribosome biogenesis [BR:
rrho03009
]
Prokaryotic type
rRNA helicases
PR018_26810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Pan_kinase
Motif
Other DBs
NCBI-ProteinID:
WFS26597
LinkDB
All DBs
Position
unnamed2:3894..5753
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AA seq
619 aa
AA seq
DB search
MTEFEGIVPPIAQALTKRGYEALTPVQKAMLDPKLGNSDVLVSAQTGSGKTVAFGLALAT
TLLGKGERFGQAGRPLALAIAPTRELALQVQRELEWLFELTGATIASCVGGMDMRTERRT
LDRGVHIVIGTPGRLCDHIRRNSLDISELQAVVLDEADEMLDLGFREDLEFILENSPAER
RTLMFSATVPRSIAALAKSYQRDAVRISTAAETKQHVDIEYRALTVAGSDRENAIINVLR
FYEAPNAIVFCSTRAAVNHLTARFNNRGFSVVALSGELSQSERTHALQAMRDGRARVCIA
TDVAARGIDLPGLDLVIHADLPTNPETLLHRSGRTGRAGRQGVSAMIVPTSGRRKAERLL
EAARINATWAKPPSADDVTRRDDERLLADPLFTEAVREDEIDFVKKLLEQHSAEQVAAAF
LRQYRSAHSAPEDLLDVAVPDDRKKPRRDEFSAPRDDHPAETRADFTDGKWVSLSVGRKQ
SAEPRWLIPMICRYGDLTKRDIGAIRMQPDETFVEFSGEAAERFLAAIGPNKTLEKGIRV
KALDSAPETGRQSHDGPKRSFAEKNNRPRTDAKPAAKFERRSEGAPAAPVEKKPWSRKPD
FARDGARPAGGKPKFKKTT
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atgactgaattcgaaggcatcgttcctccgattgcgcaggcgttgaccaaacgcggttac
gaagcgctcacccccgtgcaaaaggcgatgcttgatcccaagctcggcaattcggacgtt
ctcgtttccgcgcagaccggctcgggcaagaccgtggcatttggcctcgctcttgccacg
acgttgcttggcaagggtgaacgcttcggccaggctggtcgtccactggcgctggcgatc
gctccgacccgcgaattggctctgcaggtgcagcgcgaactcgaatggctgttcgagctg
accggtgccacgattgcttcctgcgtcggcggtatggatatgcgaacagaacgacgtacg
ctcgatcgtggcgttcatatcgtcattggtacacctggccgcctttgcgaccatattcgc
cgtaactcgctggacatttccgagctgcaggccgttgtcctcgacgaggccgatgaaatg
ctcgatctcggctttcgtgaagatctggagtttatcctcgagaactcgccagccgagcgg
cgcacgctgatgttttcggccaccgtgccgcgctcgatcgcggcgcttgccaaaagctac
cagcgtgatgcagtgcgtatcagcaccgccgctgagacgaagcagcatgtcgatatcgag
tatcgcgccctgaccgtcgccggaagcgaccgcgaaaatgcgatcatcaatgtcctgcgc
ttctacgaggcgccgaatgccatcgtattttgctcgacgcgcgcagccgtcaaccatttg
acagcccgtttcaacaaccgtggtttctcggtcgttgccctttccggcgaactcagccag
agcgagcgcactcacgcgctgcaggctatgcgtgacgggcgcgcccgcgtttgtatcgcc
accgacgtcgccgctcgtggtatcgatttgcccggtctcgacctcgtcatccatgcggat
ctgccgaccaatccggaaacgctgctgcaccgcagcggtcgcacaggccgtgccggtcgc
cagggcgttagcgccatgatcgtgcccaccagcggtcgtcgcaaggcggagcgtctgctc
gaggctgcgcgtattaatgcgacatgggcaaagccaccgtcggccgacgatgttacgcgc
cgtgacgatgaacgtttgctcgccgatcccttgttcaccgaagccgttcgcgaagacgag
attgatttcgtcaagaagctgctggagcagcacagcgccgagcaggtggctgctgcgttc
ctgcgccaatatcgctctgcacactccgcgcctgaagatctactcgatgttgcggtccct
gacgaccgcaagaagccacgccgcgatgagttttctgcgccccgtgacgaccatcctgcc
gagacgcgcgccgacttcaccgatggcaaatgggtttcgctatcggttgggcgcaagcag
agtgcagaaccacgctggttgattccgatgatctgccgttacggcgacctgacgaagcgc
gatatcggcgcgatcaggatgcagcctgacgaaacgttcgtggagttttcgggcgaggcg
gcagagcgtttccttgctgcgatcggaccgaacaagacactggagaagggtatccgcgtc
aaggctctcgacagtgcgcctgaaaccggacgccaaagccacgatggtccgaagcgcagt
tttgcggaaaagaacaaccgtccgcggacggacgccaagcctgcagcgaagttcgagcgc
aggtccgaaggcgcaccggcagcaccggttgaaaagaagccttggagcaggaagcctgat
tttgcacgcgatggcgcgaggccagctggcggtaagccaaagttcaagaaaaccacgtaa
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