Rickettsia rickettsii Iowa: RrIowa_1554
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Entry
RrIowa_1554 CDS
T00643
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor
KO
K03086
RNA polymerase primary sigma factor
Organism
rrj
Rickettsia rickettsii Iowa
Brite
KEGG Orthology (KO) [BR:
rrj00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
RrIowa_1554 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rrj03021
]
RrIowa_1554 (rpoD)
Transcription machinery [BR:
rrj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
RrIowa_1554 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_ner
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Nrap_D6
Motif
Other DBs
NCBI-ProteinID:
ABY73271
UniProt:
B0BVL1
LinkDB
All DBs
Position
complement(1232346..1234250)
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AA seq
634 aa
AA seq
DB search
MSNSNIDNDLDKIDSLLKKAKSKKIPVTYDDINNALPLNKNPSIRQLEEAILKFSDAGVD
ILESNEDDEIKLDIGMDEEFKLSTNVDNEPEDEVEEENIGTTDDPVRLYLKDMGGVDLLT
REHEVEIAKRIEEGHKTMTASLCRSPIAMRCFIVWYEDLVNEKMLLRDLIDLEANMLHDE
TPENDEEHSSETEGEEHEDNHLSMSRVETQILPNIIERMKKIAFICEELLIEAKKCYEKS
FEPKVLQNSKKYNNLELLINEVSEIHFNSKRTEEILGKMYGINRDLINKETAFLKLAEKY
GVTRQNFLDEYIGSVINAAWKEKMLKNKKVAWKELMTKESDYIDQMIAELSVIESKTGLL
VNDFKKLVNTIQKSERQTLQAKKDMIEANLRLVISIAKKYANRGLQFLDLIQEGNIGLMK
AVDKFEYRRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKILRTSRQMLNEL
GYEPTATEIANRLSMPLDKVRKVMKIAKEPISLENPVGDDSDGGQLGDFIEDKNAVAPID
AAIQSNLREVTTRVLATLTPREERVLRMRFGIGMNTDHTLEEVGQQFKVTRERIRQIESK
ALRKLQHPIRSKKLNSFRSGGKRGDGNPSDLLEA
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgagcaatagcaatatagacaatgatctagataaaatagatagtttacttaaaaaagct
aaatctaaaaagataccggtcacttatgatgatataaacaacgctcttcctcttaataaa
aatccttcaataagacaattagaggaagctatattaaaattttccgatgcaggagtagat
attttagaatctaatgaagatgatgaaattaagcttgatatcggaatggatgaagaattt
aagctatctaccaatgttgataatgaacctgaggatgaggtagaagaagaaaatataggt
actaccgatgatcctgtaagattatatcttaaggatatggggggagtcgatcttttaact
cgtgaacatgaagtagaaatagcaaaaaggattgaggaaggacataaaacaatgactgct
tccttatgtagaagccctattgctatgcgttgttttatagtatggtatgaagatttagtt
aatgaaaaaatgttactacgtgatctgatagatttagaagctaacatgttacatgacgaa
acacccgaaaatgatgaagaacatagtagtgagaccgaaggagaagagcatgaggataat
cacttatctatgtctagagtagaaacgcagatattacctaatattatagagcgtatgaaa
aagattgcttttatctgcgaagagctactcattgaagctaaaaaatgttatgagaaatct
tttgagccaaaggttttacaaaatagcaaaaaatataataatttggaattattaataaat
gaagtttcggaaatacattttaattctaaaagaacggaagaaattttaggtaagatgtat
ggaataaatcgtgatttaattaataaagaaacagcttttttaaaacttgctgaaaaatat
ggagtaactcgccaaaatttccttgatgaatatataggatcggttatcaatgcagcatgg
aaagaaaaaatgctgaaaaataaaaaagtcgcttggaaagagttaatgactaaagaatcg
gattatatagatcaaatgattgctgaattatcggttatagaatctaaaaccggtctttta
gttaatgattttaaaaaactagtgaatactatacaaaaaagcgagagacaaacgctacaa
gcaaaaaaagatatgatagaagcgaatttacgtttagttatatctattgctaaaaaatac
gctaatagaggattgcagtttttagatttaattcaagaaggtaatataggacttatgaaa
gcagtggataaatttgaatatcgccgtggttataaattctctacctatgctacgtggtgg
attagacaagctataacaagagctattgccgatcaagcaaggactatacgtattcctgtg
catatgattgaaacaattaataagatactacgtacttcaagacaaatgcttaatgaactc
ggatacgaaccaacagcaacggaaatcgctaaccgtctttcaatgccgcttgataaagtg
cgtaaagtcatgaaaatagctaaagaacctataagtcttgagaatcccgtaggtgatgat
agtgacggcggtcaattaggcgattttatcgaagataagaatgcagtagcaccgattgat
gcggcaattcagtcaaatttacgagaagttaccactagagtacttgccacccttacgcct
cgtgaagaaagagtgcttagaatgcgtttcggtataggtatgaatactgaccatacatta
gaagaagtagggcagcaatttaaagtaactagagaacgtataagacaaatcgagtcaaaa
gctttaagaaagttacaacatcctattagatccaaaaaacttaatagctttagaagcgga
ggaaagcgtggtgatggtaatccatcggatttactagaagcatga
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