Roseburia rectibacter: H8S51_000110
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Entry
H8S51_000110 CDS
T09206
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rrk
Roseburia rectibacter
Pathway
rrk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rrk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H8S51_000110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rrk03019
]
H8S51_000110
03009 Ribosome biogenesis [BR:
rrk03009
]
H8S51_000110
Enzymes [BR:
rrk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
H8S51_000110
Messenger RNA biogenesis [BR:
rrk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
H8S51_000110
Ribosome biogenesis [BR:
rrk03009
]
Prokaryotic type
rRNA helicases
H8S51_000110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_19
CMS1
AAA_30
DUF2009
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UMZ00194
LinkDB
All DBs
Position
complement(20878..22470)
Genome browser
AA seq
530 aa
AA seq
DB search
METVRFDQLDLYPQVLRAIAEMGFEEATPIQSQAIPVVMSGVDVIGQAQTGTGKTASFGI
PVLHKVDPNNKKTQVIILSPTRELAIQVADEIRKLAKYMHGVKILPVYGGQEISRQIKAL
KGGAQIIIGTPGRVMDHLRRKTIRCEAVNTIVLDEADEMLNMGFREDIETILEYIPEEGR
QTVLFSATMPKPILDITKKYQHDAVTIKVVKKELTVPNIEQYYYDVKRKDKIEVLTRLLD
YYNPKLSLVFCNTKRMVDELTEELQGRGYFAEGLHGDMKQTQRDRVMRGFRTGKTEILIA
TDVAARGIDVDDVEAVFNYDIPQDDEYYVHRIGRTGRAGRTGRAFTFVKGKEVYKLKDIM
RYCKTKIVAMPIPSTDDVAQIKAEKVMEEIGRIIDEENLKDTIDIIEKQINESDYTAMDI
AAAFLKQALGQISLDNDREDSFDFDNTGAEEGMVRLFINIGKKDRVKPGDILGAVAGESG
MPGKLVGAIDMYDKYTFVEVPREYGKEVLEAMKNAKIKGRSVNMEPANQK
NT seq
1593 nt
NT seq
+upstream
nt +downstream
nt
atggaaacagttagattcgaccagttagatttatatccgcaggtattgcgtgcaatagca
gaaatgggatttgaagaggcaacaccgatacagagccaggcaattccagttgtgatgtcc
ggtgtggacgtcattggacaggcacagacaggaacaggaaagacagcatcatttggaatc
ccggtactgcataaagtagatccgaataataaaaaaacacaggttatcatcttatcacct
acaagagaacttgcaattcaggtggcagatgagatccgtaaacttgcaaaatatatgcat
ggagtgaaaatccttccggtatacggcggacaggagatcagccgtcagatcaaagcgttg
aagggtggagcacagatcattatcggtacaccgggacgtgtcatggatcatctgcgaaga
aaaacgatccgctgtgaagcagtgaatacgatcgtacttgacgaagcggatgaaatgtta
aacatgggattccgtgaggacattgaaacaattttggagtatattccggaagaaggcaga
cagacagtattattttctgctaccatgccaaagccaatcttggatattaccaaaaaatat
cagcatgacgcggtgacgatcaaagtagtaaaaaaagagctgaccgttccaaatatcgag
cagtattattatgacgtaaagagaaaagacaagattgaagttttaaccagacttcttgat
tattataatccgaaactttccctcgtgttctgtaatacaaaacgtatggtggatgaactt
accgaggaattgcagggacgcggatattttgctgagggactgcacggagatatgaagcag
acacagcgagatcgtgtaatgcgcggtttccgtaccggaaagacagaaatactgatcgct
actgatgttgcagcgagaggcatcgatgtagatgatgtggaagcggtatttaattatgat
attccgcaggatgatgaatattatgtacaccgtatcggaagaacaggacgtgcaggaaga
acaggacgtgcatttactttcgtcaaaggaaaagaagtatataaattaaaagatatcatg
cgttactgcaaaaccaagatcgttgcaatgccgatcccgtccacggatgatgtggcacag
atcaaggctgaaaaggtcatggaagagatcggaaggatcatcgatgaggaaaatttaaaa
gatacgatcgatatcatcgaaaagcagatcaatgaatccgattataccgcaatggatatt
gctgcagcattcttaaaacaggcgttgggacagatcagtcttgacaatgacagagaggac
tcttttgattttgacaataccggagcggaagagggcatggtgcgtctgtttatcaacatc
ggtaaaaaagaccgcgtgaaaccgggcgatatcttaggtgcggttgcaggcgaatccggc
atgccgggtaaattagttggtgcgattgatatgtatgataaatatacgtttgtggaagtg
ccaagagagtatggcaaagaagtattagaagccatgaaaaatgcaaagatcaaaggacgt
tccgttaatatggagccggcaaaccagaaataa
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