Roseburia rectibacter: H8S51_002610
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Entry
H8S51_002610 CDS
T09206
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rrk
Roseburia rectibacter
Pathway
rrk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rrk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
H8S51_002610 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rrk03021
]
H8S51_002610 (rpoC)
03400 DNA repair and recombination proteins [BR:
rrk03400
]
H8S51_002610 (rpoC)
Enzymes [BR:
rrk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
H8S51_002610 (rpoC)
Transcription machinery [BR:
rrk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
H8S51_002610 (rpoC)
DNA repair and recombination proteins [BR:
rrk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
H8S51_002610 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Tudor_krimper_1st
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
UMZ00639
LinkDB
All DBs
Position
547599..551270
Genome browser
AA seq
1223 aa
AA seq
DB search
MPETMSKETTGQSISFDAIKIGLASPEKIREWSRGEVKKPETINYRTLKPEKDGLFCEKI
FGPSKDWECHCGKYKKIRYKGVVCDRCGVEITKASVRRERMGHIELAAPVSHIWYFKGIP
SRMGLILDLSPRTLEKVLYFASYIVLDAGNTALQYKQVLSESEYQEAREQYGSSFRVGMG
AEAIQELLQAIDLEKDSAELKAELEDATGQKRARIIKRLEVVEAFRESGNKPEWMIMTVI
PVIPPDLRPMVQLDGGRFATSDLNDLYRRIINRNNRLRRLLELGAPDIIVRNEKRMLQEA
VDALIDNGRRGRPVTGPGNRALKSLSDMLKGKSGRFRQNLLGKRVDYSGRSVICVEPKLK
IYQCGLPKEMAIELFKPFVMKELVANGTAHNIKSAKKMVERLQTEVWDVLEDVIKEHPVM
LNRAPTLHRLGIQAFEPILVEGKAIKLHPLVCTAFNADFDGDQMAVHLPLSVEAQAECRF
MLLSPNNLLKPSDGGLVAVPSQDMVLGIYYLTQERPGAKGEGKFFKSVNEAILAYENGVV
TLHSRITVRMTKTMPDGTTLTGNVESTLGRFIFNEIIPQDLGFVDRSIPGNELKLEVDFL
VAKKQNKQILEKVINIHGATKTAEVLDAVKAMGYKYSTRAAMTVSISDMTVPPQKPQMIK
DAQDTVDRIMKQYKRGLITEEERYKEVVETWKETDEELTHALLSGLDKYNNIFMMADSGA
RGSDKQIKQLAGMRGLMADTTGRTIELPIKSNFREGLDVLEYFMSAHGARKGLSDTALRT
ADSGYLTRRLVDVSQHMIVRESDCCEGTGREIPGMWVTAFMDGKEEIESLQERITGRFSC
NTICDKDGNVIVKANHMITPKRAAAVMSQGVDENGEPLKKVKIRTVLSCRSHMGVCAKCY
GANMATGQAVQVGEAIGIIAAQSIGEPGTQLTMRTFHTGGVAGNDITQGLPRVEEIFEAR
KPKGLAIITEFGGVATIKDTKKKREIIVTNNETGESKAYLIPYGSRIKVMDGAVLEAGDE
LTEGSVNPHDILKIKGVRAVQDYMLREVQRVYRLQGVEINDKHIEVIVRQMLQKVRVETN
GDSEMLPGVLVDALDFEDTNEKLVEEGKEPAEGKQVLLGITKASLATNSFLSAASFQETT
KVLTEAAIKGKVDPLIGMKENVIIGKLIPAGTGMKRYRNIKLDSDINEDDELMFDDFDDF
DDYEEEIPRDEENEIEEAPVEEE
NT seq
3672 nt
NT seq
+upstream
nt +downstream
nt
atgccagaaacaatgagtaaagaaaccacaggtcagtctatctcatttgatgccattaaa
attggattggcgtctccggaaaagatccgggaatggtccagaggcgaggtaaagaaaccg
gagaccattaactatagaactttaaaaccggaaaaagatggtctgttctgtgaaaagata
tttggaccgagcaaagactgggaatgtcattgtggtaaatataagaaaatccgttacaaa
ggcgttgtctgcgaccgatgcggcgttgagattacaaaagcaagcgttcgtagagagcgt
atgggacacattgagcttgctgctccggtatcccatatctggtactttaagggtattccg
tcacgtatgggattaatccttgacttatccccaagaactcttgaaaaagttctttacttt
gcttcttatatcgtactggatgcgggcaacaccgcattgcagtacaaacaggtactttcc
gagagcgaataccaggaagcaagagagcagtacggcagttctttccgtgttggaatgggt
gctgaggctattcaggaattattacaggcaatcgatctggagaaagattccgcagaatta
aaggcagagcttgaggatgcaaccggccagaaacgtgcaagaatcatcaagagactggaa
gttgtagaggctttccgtgagtccggcaacaaaccggagtggatgatcatgacagtgatc
ccggttatcccgccagatttacgtcctatggttcagctggatggtggacgttttgcaaca
tccgatctgaatgatttatacagacgtatcatcaaccgtaacaatcgtttaagaagactc
ttagagttaggagcaccggatatcatcgtccgcaacgagaaacgtatgcttcaggaagct
gttgatgccctgatcgataatggtcgtcgtggccgtcctgttacaggtcctggtaaccgt
gcattaaaatctctttcagatatgttaaaaggtaaatccggacgtttccgtcagaactta
cttggaaaacgtgttgactactccggacgttccgttatctgtgtagagccgaagttaaag
atttatcagtgcggtctgccaaaagagatggcaattgagctgttcaaaccgttcgtaatg
aaagagcttgttgcaaacggaactgcacacaatatcaagagtgcgaaaaagatggttgag
agactccagacagaggtttgggatgttctcgaagacgttatcaaagagcatccggttatg
ttaaaccgtgctcctacactgcatcgtcttggtattcaggcattcgagccgatcctcgta
gaaggtaaggcaattaagttacatccattggtatgtaccgcgttcaacgccgacttcgat
ggtgaccagatggctgtgcatcttccactttctgtagaagcacaggcagagtgccgtttt
atgttactttcaccgaataacctgttaaaaccgtctgatggtggtcttgttgccgttcct
tcacaggatatggtacttggtatctactatctgacacaggagagaccgggagcaaaagga
gaaggtaaattcttcaagagtgtaaacgaagcaattcttgcatacgagaatggtgtagta
acacttcactcaagaatcactgtccgcatgacaaagaccatgccggatggaacaacactt
accggaaatgtagaatctacattgggacgcttcatttttaatgagatcattccacaggat
cttggatttgtagacagaagcattccgggcaatgaattaaaactggaagtagatttcctc
gttgcaaagaaacagaataaacagattctggaaaaagtaatcaatatccatggtgcaaca
aagacagcagaagttcttgatgccgtaaaagctatgggttacaaatattccacaagagca
gctatgaccgtatccatttccgatatgaccgtaccgcctcagaaaccgcagatgatcaaa
gatgcacaggatactgttgaccgtatcatgaaacagtataaacgtggtcttatcactgag
gaagagcgttacaaagaggttgttgaaacctggaaagagaccgatgaggagctgacacat
gcacttctttccggacttgataaatacaacaacatcttcatgatggctgactccggagcc
cgtggttccgataaacagatcaaacagcttgccggtatgcgtggacttatggcagataca
accggtcgtacgatcgagctgccgatcaagtcaaacttccgtgaaggtcttgacgtactc
gaatacttcatgtccgcacatggtgcccgtaaaggtctttccgataccgcacttcgtacg
gctgactccggttacctgaccagacgtcttgttgatgtttcacagcacatgatcgttcgt
gagtctgactgctgtgagggtacaggcagagagattccgggaatgtgggtaactgcattc
atggatggaaaagaagagatcgagagtcttcaggagcgtatcacaggacgtttctcctgc
aatacgatctgtgacaaagatggaaatgtcattgtaaaagcaaaccatatgatcacaccg
aagcgtgcagctgcagttatgagccagggggttgatgagaatggcgagccgcttaagaaa
gttaagatccgtaccgtattatcctgccgctcccatatgggtgtctgtgcaaaatgttac
ggtgcaaacatggctaccggccaggctgtacaggttggtgaggcaatcggtattatcgca
gcacagtctatcggtgagcctggtacacagcttaccatgcgtacgttccataccggtggt
gttgccggaaacgatattacacagggtcttcctcgtgtcgaggagatttttgaggcaaga
aagcctaagggtcttgctatcatcacagagtttggcggcgtagcaacgattaaggatacc
aagaagaaacgtgagatcatcgttaccaataatgagaccggagaatcaaaggcatatctg
atcccttatggttccagaattaaggttatggatggcgcagtacttgaagccggtgatgag
ctgacagaaggttctgtaaatccacacgatatcttaaagatcaaaggtgtccgtgcagtt
caggattacatgctccgcgaggtacagcgtgtataccgtctgcagggtgtagaaatcaac
gataagcatatcgaggttattgtgcgtcagatgttacagaaagtacgcgttgagacaaac
ggtgattcagagatgcttccgggtgtattggtagatgcacttgatttcgaagataccaat
gagaaactggtagaagaaggaaaagagccggcagagggcaaacaggtattacttggtatt
accaaggcttcccttgcaacgaactccttcttatcagcagcatccttccaggagacaaca
aaagttcttacggaagctgcaatcaaaggtaaagtcgatccattgatcggtatgaaagag
aatgttatcatcggtaaactgattcctgcaggaacaggtatgaagagataccgcaacatt
aaactggattctgatatcaatgaggatgacgagctgatgtttgatgattttgatgacttc
gacgattatgaggaagagattccgagggacgaagaaaatgaaatcgaagaagctccggta
gaggaagaataa
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