Roseburia rectibacter: H8S51_003070
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Entry
H8S51_003070 CDS
T09206
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
rrk
Roseburia rectibacter
Brite
KEGG Orthology (KO) [BR:
rrk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
rrk03009
]
H8S51_003070 (rlmD)
Enzymes [BR:
rrk01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
H8S51_003070 (rlmD)
Ribosome biogenesis [BR:
rrk03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
H8S51_003070 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
TRAM
TRM5-TYW2_MTfase
MTS
PrmA
Methyltransf_15
Methyltransf_11
Methyltransf_12
PCMT
Ubie_methyltran
Methyltransf_4
FtsJ
Motif
Other DBs
NCBI-ProteinID:
UMZ00725
LinkDB
All DBs
Position
635211..636962
Genome browser
AA seq
583 aa
AA seq
DB search
MQKNDIIELKIEDMGVDGEGIGKYDGMTFFVKDAVLGDEIEARITKMKKNYGYARVEKIL
TPSEFRVTPQCELHRRCGGCQIQTLDYQKQLEFKQNKVRGNLIRIGGFEPEFIDRIMEPV
VGMKEPYRYRNKAQFPIGADKDGDPVAGFYAARTHSIIPVNDCKLGVEENQIILNEVLSY
MKECHVASYDENTGKGLVRHVLIRYGFSTKELMVCVIINGNSLPKVEKLIDRLTAIEGMK
SISINQNTKKTNVILGDVTKCIWGDPYITDMIHLRDTKDFSLTDTAVAYHISPQSFYQVN
PVQTEKLYSLALDYAGLTGKETVWDLYCGIGTISLFLAQKAGKVYGVEIVPQAIEDAKNN
AALNGINNAEFFVGKAEEVLPAFYEKKKDTDADMLHPDVIVVDPPRKGCDGVCLETMLKM
QPERIVYVSCDSATLARDLKMLCEGGYELCKVRAVDQFGNTTHVETVVLLSKGAKDPVDL
CSARTEVERRMVDSRKVKVDFSLEDMDLSEFKGKATYEQIKAYVLEQTGLKVSSLYIAQI
KKKCRLDVGENFNLAKSENTRQPQCTPEKEDAIMQAFRHFGIL
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
atgcagaaaaatgatatcatagaactgaaaatcgaagatatgggcgtggacggcgaagga
atcggaaaatacgatggcatgacctttttcgttaaagatgcggtgcttggagatgagatc
gaagcccgcatcactaagatgaaaaaaaattatggttatgcgcgggtggaaaagattctt
acgccgtctgaatttcgtgtgacaccgcagtgtgagctccacagaagatgcggcggatgc
cagatacagacattagattatcagaaacaactggagtttaagcagaataaagtacgcgga
aatctgatccgcatcggtggttttgaaccggaatttattgaccgtatcatggagccggtt
gttggaatgaaagagccataccgttaccggaacaaggcacagtttccgatcggtgcggac
aaggatggtgatccggttgccggtttttatgcagcgcgcacccatagtatcattccggta
aatgactgcaagctgggggtggaggaaaatcagattattttaaatgaagtcctttcttat
atgaaagaatgtcatgtggcatcttacgatgaaaatacaggtaaggggctggttcgtcat
gtcctgatccgctatgggttttccacaaaagagcttatggtctgtgtgattatcaacgga
aatagtcttcctaaagtggaaaaactgatcgacagattgacagccatcgagggaatgaag
agcatttccatcaatcagaatacgaagaaaacaaatgtgatcctcggggatgtgacgaaa
tgtatctggggcgatccatacattaccgatatgatccatctacgcgatacgaaggatttt
tcactgactgatacagcggtcgcataccatatttcaccgcagtcattttatcaggtcaat
cctgtccagacggaaaaactctacagccttgcgctcgactatgcgggactgaccggaaaa
gagaccgtgtgggatctatattgcggcatcggcacgatttcactttttcttgcacagaaa
gcgggaaaagtttatggggtggagatcgtcccacaggcaatcgaggatgcgaagaataat
gcggcgctcaacggtatcaataatgctgagttttttgtaggaaaagcagaggaagtgctg
ccggcattttatgaaaaaaagaaagacacagatgcagatatgctgcacccggatgtgatc
gtggtcgatccgccgcgaaaggggtgcgatggtgtatgtcttgagacgatgcttaagatg
cagccggagcggatcgtgtatgtaagctgtgattcggcgacgttagcgagggatcttaag
atgctttgtgagggcggatatgagctttgcaaggtaagggcggtggatcagtttgggaat
acaacacatgtggagactgttgttttactttccaagggcgctaaagatccggtggatctt
tgctcagcgcggaccgaagtggaacggagaatggtcgacagcagaaaagtgaaggtggac
ttctctctggaggatatggatttatctgaattcaaaggaaaagcgacatatgagcagata
aaggcatatgtattggagcagacaggacttaaggtttcatcactgtatatcgcacagatt
aagaagaagtgtagattggatgtcggcgagaatttcaatctggctaaatcagagaatacg
agacagccacagtgtacaccggagaaggaagatgcaattatgcaggcgtttaggcatttt
ggcatcttatag
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integrated database retrieval system
