Roseburia rectibacter: H8S51_006550
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Entry
H8S51_006550 CDS
T09206
Name
(GenBank) DEAD/DEAH box helicase family protein
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
rrk
Roseburia rectibacter
Pathway
rrk03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rrk00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
H8S51_006550
09124 Replication and repair
03420 Nucleotide excision repair
H8S51_006550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rrk03021
]
H8S51_006550
03036 Chromosome and associated proteins [BR:
rrk03036
]
H8S51_006550
03400 DNA repair and recombination proteins [BR:
rrk03400
]
H8S51_006550
Enzymes [BR:
rrk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
H8S51_006550
Transcription machinery [BR:
rrk03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
H8S51_006550
Chromosome and associated proteins [BR:
rrk03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
H8S51_006550
DNA repair and recombination proteins [BR:
rrk03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
H8S51_006550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
ResIII
PhoH
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
UMZ01928
LinkDB
All DBs
Position
1374676..1377129
Genome browser
AA seq
817 aa
AA seq
DB search
MSTKIEKNEKGVIKISVRDLVEFILREGDIDNRHGRGASAEAMLAGGRIHRKIQKRKGSN
YHAEVPLKIAIEEDKYQLVIEGRADGILIESATEEITFADNFNHRTMPIDCKVTIDEIKG
MYMKLDLLEDAIGVHRAQAMCYAYIYALQHDLSAISVQMTYCNLDTEDIRYFHYDYTFEE
LADWFEKLIDEYKKWADFQFAWKKLRQASIKPLQFPFPYRDGQRELVAGVYRTIKRKKNL
FIQAPTGAGKTISTVFPAVKAVGEDLADKIFYLTAKTITGTVAREAFELLRKNGYQAKVL
TITAKEKLCLCEEMECNPINCPYAKGHYDRVNDAVFSLLQKEDVITREVILEQAKEYNVC
PFEMCLDTATWVDDIICDYNYVFDPNVYLKRFFADGTTGDYIFLVDEAHNLVERSREMYS
AIIYKEDFLSAKKILKKYGQAKLVRELEKCNRVLLAYKRECEKYMIYESIGNLAFDFMNV
ASDLDEFLQKSSEFPERKDLSEFYLNLRNFLNIYELLDDHYVIYAEHEQDGRFKLKLYCV
DPSKNLQERINKGNATIFFSATLLPVGYYKSLLSTETDNYAVYAKTAFREEQKLLLLGND
VSSKYTRRSVAEFERIASYIKRTVDAKKGNYMVFFPSYKMMEQVYDIFQDENQADPSCEI
ETLIQQPGMKEEERESFLQAFSEEVSEKRNGSLAAFCVMGGIFGEGIDLKNEQLIGAIVV
GTGLPQISNEREILMGYFEKRLGAGFDYAYRYPGMNKVLQAAGRVIRTVEDVGVIELLDE
RFLQSEYRALFPREWEQQTICRVDTVEQYLKKFWNRS
NT seq
2454 nt
NT seq
+upstream
nt +downstream
nt
atgagtacaaagattgaaaagaatgaaaaaggtgtcataaaaatatcagttcgtgatctg
gtggaatttattctgcgggagggggacattgataatcgtcatggacggggcgcttcagca
gaggcgatgcttgcagggggaagaatccacaggaagattcaaaaacgcaagggcagtaat
tatcatgccgaggttccacttaaaattgcaatagaggaagacaaatatcagcttgtgatc
gagggacgtgcggatggaattttaattgagagtgcaacggaggaaattacatttgcagac
aattttaaccataggacgatgccgatagactgcaaagtcacgattgatgagatcaagggc
atgtatatgaaacttgatcttttagaggatgcgatcggtgtgcaccgtgcgcaggcaatg
tgttatgcttatatctatgcattgcagcacgatctgtctgctatttcagtgcagatgacg
tattgcaatttagatacggaagatatccggtattttcattatgattatacatttgaggag
cttgcagactggtttgagaagctgatagatgaatacaaaaaatgggctgattttcagttt
gcatggaaaaagctgcgtcaggcatctattaaaccactgcagtttccatttccttacagg
gatgggcagagggagctggtggctggtgtatatcgtacgataaaaagaaaaaagaatctt
tttatccaggcaccgaccggagccggaaagacgatatcaacggtgtttcctgcagtcaag
gcagtgggcgaggatctggcagataagatattttatctgacggcaaaaacaatcacggga
acagtagcgagagaagcgtttgaacttctgcgcaaaaacggatatcaggcaaaggtgctt
acgatcacggcaaaggaaaaactgtgcctgtgtgaagaaatggagtgcaatcccattaac
tgtccttatgcaaaaggacattatgacagagtaaatgatgcagttttttctctgctgcaa
aaagaagacgtgatcacgagagaagtgatattagagcaggcaaaagaatacaatgtctgt
ccgtttgaaatgtgtcttgatacggcaacctgggtagatgacattatttgtgattataat
tatgtatttgatcccaatgtttatttaaaacgtttttttgcagatggaacaacaggggat
tatatttttctggtggatgaggctcataatctggttgagcgcagcagggaaatgtacagt
gccattatatataaggaagattttctttcggcaaaaaagattttaaagaaatatggtcag
gcaaaactggtacgggaacttgaaaagtgtaaccgtgtattactggcatataaacgcgaa
tgtgaaaaatacatgatctatgaatcaattggaaatcttgcatttgacttcatgaatgtg
gcatcagatcttgacgaatttctgcagaaatcgtcggagtttccggaacggaaagatctg
agtgagttttatttaaatctgcgtaactttttgaatatttatgagttattggatgaccat
tatgtcatatatgcggaacatgagcaggatgggcgttttaaactaaaattatattgtgtg
gacccatccaaaaatcttcaggagcggatcaataagggaaatgcgacgattttcttttct
gcgacactgctcccggtgggatattataagagtctgctttcgacagaaacggataattat
gcagtttatgcgaagacggcattccgggaagaacagaaactgctgttgcttggaaatgat
gtgagcagtaagtatacaaggcggagtgtagcagagtttgaacggatcgcatcctatata
aagaggacagtcgatgccaaaaaaggaaattacatggtgtttttcccttcctataaaatg
atggagcaggtttatgatattttccaggatgaaaatcaggcagatccatcttgtgagatc
gaaacattgatccagcagcccggaatgaaggaagaagagagagaatcttttttgcaggct
ttttcagaagaagtatctgaaaaacggaatggatcgttagctgcattttgcgtaatggga
ggtattttcggtgaggggatcgatctgaaaaatgaacagttgatcggtgcaatcgttgtc
ggtacaggacttccacagatcagcaatgagagagaaatcctgatgggatattttgaaaaa
agacttggcgccggttttgattatgcttatcgttatcctgggatgaacaaggtgcttcag
gcagcaggaagagtgataaggacagtggaagatgtcggagtcattgaacttttagatgaa
cgctttttgcagagtgagtatcgtgcactgttcccaagagaatgggaacagcagacaata
tgcagggtagatacagtcgaacagtatttaaaaaaattctggaaccgttcctaa
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