Roseburia rectibacter: H8S51_009125
Help
Entry
H8S51_009125 CDS
T09206
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
rrk
Roseburia rectibacter
Brite
KEGG Orthology (KO) [BR:
rrk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rrk03032
]
H8S51_009125 (topA)
03400 DNA repair and recombination proteins [BR:
rrk03400
]
H8S51_009125 (topA)
Enzymes [BR:
rrk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
H8S51_009125 (topA)
DNA replication proteins [BR:
rrk03032
]
Prokaryotic type
DNA Topoisomerases
H8S51_009125 (topA)
DNA repair and recombination proteins [BR:
rrk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
H8S51_009125 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim
Zn_ribbon_Top1
Toprim_4
Zn_ribbon_recom
DUF7575
HVO_2753_ZBP
Zn_ribbon_IS1595
PSV_ORF131-like_dom
Zn_ribbon_GRF_2
Motif
Other DBs
NCBI-ProteinID:
UMZ01842
LinkDB
All DBs
Position
1920876..1922963
Genome browser
AA seq
695 aa
AA seq
DB search
MAKYLVIVESPAKVKTIKKFLGKNYEVVASNGHVRDLPKSQMGIDTENDFEPKYITIRGK
GDILAKLRKEAKKADKVYLATDPDREGEAISWHLSQALKLDDKNAQRITFNEITQNAVKA
SLKEPRQIDMNLVDAQQTRRILDRLVGYEISPLLWAKVKRGLSAGRVQSVALRIICDRED
EINAFIPEEYWTLDAELSVKGEKKALLAKFYGDENGKVTISSKEQADRIMAEMQKEEFHI
LEVKKGERVKKAPLPFTTSTLQQEASKALNFPISKTMRIAQQLYEGVDVKGQGTVGLITY
LRTDSVRISEEADAQAREYIAENYGENYIAGEKTAKKNGAKIQDAHEAIRPSDINRTPVM
VKESLSRDQFRLYQLIWKRFAASRMSQAVYETTNVKIGAGKYQFTVSASKIAFDGFMSVY
TSDDDEKAENNVLVGSIDENTVLGLKEFDEKQHFTQPPAHYTEASLVKTLEELGIGRPST
YSPTITTLLGRRYIVKEAKNLYVTELGEVVNQIMKESFPSIVDEHFTANMESLLDGVEEG
NVNWKTVVRNFYPDLDEAVKAAQKDLEKVKIEDEVTDVICDVCGRNMVVKYGPHGKFLAC
PGFPECRNTKPYLEKIGVACPKCGKEVVLRKTKKGRKYFGCEDNPECDFMSWSRPVAEKC
PKCGGYMVVKGNKIVCADEQCGYVTDRKNVEKDSE
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagtatcttgttattgtggagtcgcccgcaaaggtaaagacaattaaaaaattt
ctgggaaaaaattatgaggtagtggcatcgaacggacatgtgagagatctgccaaaaagc
cagatgggaattgatacagagaatgattttgaacccaaatatattacgatccgcggaaag
ggagatatcctggcaaaactgcgaaaggaagcaaaaaaagcagataaagtttatcttgca
actgaccccgatcgtgagggagaggcgatttcatggcatttgagccaggcactgaagctg
gatgataaaaatgcacagagaattacttttaatgagattacgcagaatgcagtgaaggct
tcgttaaaagaaccgcgccagattgacatgaatcttgtagatgcacagcagaccagacga
attctggatcgtctggtgggatatgagatcagtccactgctatgggcaaaagtaaaaaga
ggacttagtgccggacgtgtccagtcagtcgcgcttcgcattatctgtgaccgggaggat
gagattaatgcattcattccggaagaatactggacactggatgcagaactgtctgtaaaa
ggtgaaaaaaaggcattgctcgccaaattttatggagatgagaatggaaaagttacaatt
tccagtaaagagcaggcagaccgcatcatggcagagatgcagaaagaagagtttcacatt
ttagaggtaaaaaaaggagaacgtgtgaaaaaagctccgttaccgtttacaaccagtacg
ttacaacaggaagcatctaaggcacttaattttccgatttcaaaaacaatgcgtattgca
cagcagttgtatgaaggtgtggatgtcaaaggtcagggaacggttggtcttatcacttac
ttaagaacagactctgtacgaatttcagaagaggcagatgcacaggcgcgggaatatatt
gctgaaaattatggtgagaactatattgcaggtgaaaaaacagcaaagaagaatggagcc
aaaattcaggatgcgcatgaggcgatccgtccgtctgatatcaatcgtacacctgtcatg
gtgaaagagtcgttatcgagagatcagttccgcctgtaccagttgatctggaaacgtttt
gcggcaagcagaatgtcacaggcggtttatgagacaacaaatgtaaaaattggagcagga
aaataccagtttacagtatctgcttctaaaattgcatttgacggatttatgtcagtgtat
acaagcgatgatgatgaaaaggcagagaataatgtcctggtaggctctattgatgagaat
acagtgcttggattaaaagagtttgatgaaaaacagcattttacccagccaccggcccac
tatacagaggcatcactggtaaaaacattagaggagctgggaataggacgtccgagtact
tattcaccgacaatcacgacactgctaggaagacgatatattgttaaggaagcaaaaaat
ttatatgtgacggaacttggagaagtggtcaatcagattatgaaggaatcatttccaagc
attgtagacgaacattttaccgcaaacatggaatcgctgcttgatggtgttgaagaaggc
aatgtaaactggaaaacagtggtacgtaatttctatccggatctggatgaagctgtgaag
gcagcgcagaaggatctggaaaaagtaaaaatagaagatgaagtgacagatgttatctgt
gatgtctgcggcagaaatatggtagtaaaatatggtccgcatggcaagttccttgcatgt
ccgggattcccggaatgccgcaatacaaaaccttatctcgaaaagattggagttgcatgt
ccgaagtgcggtaaggaagttgtacttcgcaaaacgaaaaaaggaagaaaatatttcggc
tgcgaggataatccggaatgtgattttatgagctggtcaagacctgttgcagaaaaatgt
ccgaaatgtggcgggtacatggtagtcaaaggaaataagattgtgtgtgcagatgaacag
tgcggttatgtgacagatcgtaaaaatgttgaaaaagattccgaataa
DBGET
integrated database retrieval system
