Roseovarius rhodophyticola: RZS32_011005
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Entry
RZS32_011005 CDS
T10617
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rrl Roseovarius rhodophyticola
Pathway
rrl03020
RNA polymerase
Brite
Enzymes [BR:
rrl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RZS32_011005 (rpoC)
Transcription machinery [BR:
rrl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RZS32_011005 (rpoC)
DNA repair and recombination proteins [BR:
rrl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RZS32_011005 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
WYK16956
LinkDB
All DBs
Position
2184823..2189064
Genome browser
AA seq
1413 aa
AA seq
DB search
MNQELTNNPFNPNAPAKVFDEIKVSLASPERILSWSYGEIKKPETINYRTFKPERDGLFC
ARIFGPIKDYECLCGKYKRMKYRGVVCEKCGVEVTLQKVRRERMGHIELAAPCAHIWFLK
SLPSRIGLMLDMTLRDLERVLYFENYVVIEPGLTDLTYGQMLSEEEYMDAQDAYGMDAFT
ANIGAEAIREMLANIDLENEAETLRADLAEATGELKPKKIIKRLKVVESFIESGNRPEWM
VMTVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKR
MLQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDFSGRSVIVT
GPELKLHQCGLPKKMALELFKPFIYSRLEAKGLSSTVKQAKKLVEKERPEVWDILDEVIR
EHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQ
LEARVLMMSTNNVLSPANGAPIIVPSQDMVLGLYYTSIMREGMKGEGMTFASIEEVQHAL
DAGEVHLHAKITARIPQIDETGQEVMMRFETTPGRVRIGSLLPLNAKAPFELANKLLRKK
EVQQVIDTVYRYCGQKESVIFCDQIMSMGFKEAFRAGISFGKDDMVIPDDKWTIVEETRD
QVKGFEQQYMDGLITQGEKYNKVVDAWSKCNDQVTDAMMGTISADKRDEAGAVEEPNSVY
MMAHSGARGSVTQMKQLGGMRGLMAKPNGDIIETPIISNFKEGLTVLEYFNSTHGARKGL
SDTALKTANSGYLTRRLVDVAQDCIVREHDCGTERAITAEPAVNDGEVVASLSERILGRV
AAEDIVHPVSNDVIVANGQLIDERTADAIEEAGVQTTRIRSPLTCEAEDGVCAMCYGRDL
ARGTMVNTGEAVGIIAAQSIGEPGTQLTMRTFHIGGVAQGGQQSFLEASQAGKVVFENAQ
TLENANGETLVMGRNMKLLIMGDKDVELASHKVGYGTKLFAKDGDKVARGDKLFEWDPYT
LPILAEKSGTAKFVDLVSGIAVRDVTDDATGMTQKIVTDWRAAPKGNELKPEILIVDKDG
EPVRNDAGNPVTYPMSVDAILSIEEGQEVHAGDVVARIPREGAKTKDITGGLPRVAELFE
ARRPKDHAIIAEIDGYVRYGRDYKNKRRISIEPADESMEPVEYMVPKGKHIPVQEGDYVQ
KGDYIMDGNPAPHDILSIMGVEALADYMIDEVQDVYRLQGVKINDKHIEVIVRQMLQKWE
IQDSGETTLLKGEHVDKAEFDAANEKAIERGKRPAQGEPILLGITKASLQTRSFISAASF
QETTRVLTEASVQGKRDKLVGLKENVIVGRLIPAGTGGATLQMRQIAQQRDNVVIEARRE
EAEAAAALAAPIDDIVGGDAFDTFIETPESREE
NT seq
4242 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaggaactgacaaacaacccgttcaaccctaacgctccggccaaggtgtttgac
gaaatcaaagtctcattggcctcgccagagcgtattctgagctggtcttatggcgagatc
aaaaagcctgagacgatcaactaccggacgttcaagcccgagcgtgacggcctgttctgt
gcgcgtatctttggcccgatcaaagactatgagtgtctctgcggcaaatataaacgcatg
aaatatcgcggtgttgtctgcgagaaatgcggtgtggaagtcacgctgcaaaaggtccgt
cgcgagcggatgggccatatcgaattggccgcaccttgcgcgcatatctggtttctgaag
tcgctgccgtcgcgtattggcctcatgctggacatgactttacgcgatcttgagcgtgta
ttgtacttcgagaactacgttgtgatcgaacccggtctgacggacctcacctacggccag
atgctctcggaagaagagtatatggacgcgcaagacgcctatggcatggacgcgttcacc
gccaatattggtgcggaagccattcgtgagatgctggccaatatcgaccttgagaatgag
gctgagacgctgcgtgccgatctggcagaggcgacaggtgaactgaagcccaagaagatc
atcaagcgtctgaaagttgtcgaaagcttcatcgaatccggcaaccgcccggaatggatg
gtgatgaccgttgtgccggtcatcccaccagagctgcgcccgctggtgccgctggatggg
ggccgctttgcgacatcggatctcaatgatctctaccgccgggtgatcaaccggaacaac
cgcttgaagcgcctcattgagctgcgcgcgccggatattattgttcggaacgaaaagcgg
atgctgcaagagtcggttgacgctctgttcgacaacggccgtcgtggccgcgtgataacc
ggtgccaacaagcgtccgttgaagtcgctgtctgacatgctgaaaggcaagcagggccgc
ttccgtcagaaccttctcgggaaacgggtcgacttctcgggccgttcggtcattgtgacc
ggtcctgagcttaagttgcatcaatgtggtttgcccaagaagatggcgctggagctgttt
aagccgtttatttacagtcgcttggaggccaagggtctgtcgagcacagtgaagcaggcg
aagaagctcgtcgaaaaagagcgccccgaagtttgggatatccttgatgaggtgatccgt
gagcatccggttcttctgaaccgcgcgccaacgctgcaccgtctgggtattcaggcgttt
gagccggttctgatcgaaggtaaggcgattcagcttcaccccctggtttgttcggccttt
aacgccgacttcgacggtgaccagatggcggtgcacgtccctctgagccttgaggcgcag
ttggaagcgcgggttctgatgatgtcgacaaacaacgtgttgtcgcctgcgaacggtgcg
ccgatcatcgtgccatcacaggacatggttctgggcctctactacacctcgatcatgcgt
gaaggcatgaagggtgagggcatgacctttgcctccatcgaagaggtgcagcatgctctt
gatgcgggtgaagtgcacctgcatgccaagatcacagcgcgcattcctcagattgatgag
actggtcaagaggtcatgatgcggtttgagaccacaccgggccgcgtgcggatcggatct
ctcttgccgctcaacgccaaagcgccgtttgagctggccaacaaactgttgcgcaagaaa
gaagtgcagcaggtgatcgacaccgtctatcgctattgtggtcaaaaagagagcgtcatc
ttctgcgaccagatcatgtccatgggcttcaaggaggcgttccgtgcgggcatttccttt
ggcaaggacgacatggtcattcctgacgacaagtggacgattgttgaagaaacccgtgac
caggtgaaggggtttgaacaacagtatatggacggcctgatcacccagggtgagaagtac
aacaaagtggtcgatgcctggtcgaaatgtaacgatcaggtcaccgatgccatgatggga
acgatctcagccgataaacgggatgaggccggtgccgttgaggaacccaacagtgtttac
atgatggcgcactccggtgcgcggggttcggtcacgcagatgaaacagctgggcggcatg
cgcggcctgatggccaagccaaacggcgacatcatcgagacaccaatcatctcgaacttt
aaagaaggcctgacggttcttgagtacttcaactcaacccacggcgcgcggaaaggtctg
tcagacaccgctctgaaaacagcgaactccggttacctgacacgtcgtctcgtggacgtg
gcgcaggactgcatcgtgcgggagcatgattgcggcaccgagcgtgcgatcaccgcagag
cctgcggtgaacgacggtgaagtcgtggcatctttgtccgagcgtatcctgggccgtgtt
gcggcggaggatattgtgcacccagtgtccaacgatgtgattgttgccaacggccagttg
atcgacgaacgcacggcagatgccattgaggaggcaggtgtgcaaacgacgcgcattcgc
tcgcctctgacatgtgaggccgaggatggcgtctgtgccatgtgctatggtcgtgacctg
gcgcggggcacaatggtcaacaccggcgaagctgtggggatcatcgcagcgcaatccatt
ggtgagccgggcacgcagctgacgatgcggacgttccacatcggcggtgtggctcagggt
ggccagcagtccttcttggaagcaagccaggcgggcaaggttgtctttgaaaacgcccag
acccttgagaacgccaatggcgagaccctcgtcatgggccgcaacatgaagctgttgatc
atgggcgacaaggatgtcgaactggccagccacaaggttgggtatggcaccaagcttttt
gccaaggatggcgacaaggtggctcggggcgacaagctctttgagtgggacccttacacg
ctgcctattctggccgagaagagcgggacggcgaaatttgttgacctggtctcgggcatt
gcggtgcgcgatgtgacggatgatgccactggcatgacccagaaaatcgtgaccgactgg
cgggcagcacccaagggcaatgagctcaagcctgagatcctgattgtagacaaagatggt
gagccggtgcgtaacgatgcgggcaacccggtgacctatccgatgtccgtggatgcgatc
ctgtccattgaagaaggccaggaggtgcatgccggtgacgtcgtcgcgcgtattccgcgg
gaaggggccaagaccaaggacatcaccggcggtctgccacgggtggctgaactctttgag
gcgcgtcgccccaaagatcacgccattattgccgaaatcgacggctatgtgcgctacggt
cgcgactataagaacaagcgccggatcagcatcgagcctgccgatgagagcatggagccc
gtcgaatacatggtgcccaagggcaagcacattccggttcaggaaggtgactacgtccag
aaaggcgactacatcatggacggcaacccggccccgcatgacatcctgagtatcatgggt
gtcgaggcgcttgccgattacatgatcgacgaagttcaggacgtgtatcgactgcaaggt
gtgaagatcaacgacaagcacatcgaggttatcgtgcgccagatgcttcagaagtgggaa
atccaggattctggggaaaccacgcttctgaaaggcgagcatgtggacaaagccgagttt
gatgccgccaatgaaaaggccatcgaacgcggcaaacgtccggctcagggtgagccgatc
cttctggggatcaccaaggcgagcctgcagacacgctcgttcatctcggcggcgtccttc
caggagaccacgcgtgttctcaccgaggcctccgtgcagggcaaacgcgacaagcttgtc
ggtctgaaggaaaacgtcatcgtgggtcgccttattccggcgggcacaggtggcgcgaca
cttcagatgcgccagatcgcgcagcagcgtgacaatgtggtcatcgaggcccgtcgcgaa
gaggccgaagcggccgctgccttggctgcgccgattgacgatatcgtcggcggcgatgcg
ttcgatacgtttattgaaacgccggagagccgcgaagagtaa
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integrated database retrieval system
