Roseovarius rhodophyticola: RZS32_012910
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Entry
RZS32_012910 CDS
T10617
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
rrl Roseovarius rhodophyticola
Pathway
rrl03410
Base excision repair
rrl03430
Mismatch repair
rrl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rrl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RZS32_012910 (recJ)
03430 Mismatch repair
RZS32_012910 (recJ)
03440 Homologous recombination
RZS32_012910 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rrl03400
]
RZS32_012910 (recJ)
DNA repair and recombination proteins [BR:
rrl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
RZS32_012910 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
RZS32_012910 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RZS32_012910 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Rv0428c_C
Motif
Other DBs
NCBI-ProteinID:
WYK17309
LinkDB
All DBs
Position
complement(2539888..2541630)
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AA seq
580 aa
AA seq
DB search
MTGFLGVTSSLTGRQWVGPSPETDRLAEAMAQATALPRALCQTLSRLGVSSDAAEAYLAP
KLRDLMPDPRSLKDMEAAAARFLQAVDAKEKIAVFADYDVDGGSSAALLIDWLRQMGRAA
TLYVPDRIDEGYGPNAPAMAELAAAHDLILCVDCGTLSHDALAAAKGADVIVLDHHLGGE
TLPPALAVVNPNRQDESGELAHLCAAAVVFLMLVEAGRQLREAGKRGPDLMAMLDLVALA
TVADVAPLRDVNRAFVRTGLSVMANRARPGLVALSDVARLDAAPNAYHLGFVFGPRVNAG
GRVGRADLGARLLACNDLHEAKSLAEKLNELNVERQDVEAGVRAAALDQAEERGLEAPLV
WAAGDGWHPGVVGIVASRLKEATNRPAIVIGFDGDEGKGSGRSVSGVDLGHAIQKLAAEG
LLIKGGGHKMAAGLTVAREKLEAAMDRLSKLLAKQGAGQSGPADLRLDGLLMPGGATTEL
VEQIEAAGPFGAGAPGPRYAFADQGVSFAKRVGDSHLKLRFGDGTGPTLDAIAFGAFDTP
LGQALEQHGGARFHLAGRLDINTWGGRQTVQLRLEDAALA
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
gtgaccggctttctcggcgtcacctcttccctgacgggccgacaatgggtcggcccctct
cccgagacagaccggctggccgaggccatggcgcaggccaccgccctgccccgcgctttg
tgccaaaccctgagccgccttggtgtctccagcgacgcagcggaggcttatcttgcgccc
aagctgcgcgacctgatgcctgatccgcgcagtttgaaagatatggaagctgccgctgcg
cggtttttgcaggctgtggatgcaaaagaaaaaatcgctgtattcgccgattatgatgtc
gatggcggatcctcggcagcactgctgatcgactggctgcgtcagatggggcgcgccgct
accctctatgtgccggaccgcatcgacgaaggctatggccccaatgccccggccatggcc
gaacttgcggcggcgcatgacctgatcctctgcgttgattgcggcacgctcagccacgat
gcactggccgcggcaaagggcgcggacgtgatcgtgctggatcaccatctgggaggtgaa
accctgccgcccgctttggccgtggtgaaccccaaccgccaagacgagagcggcgaactg
gcgcatctctgcgctgcggctgtcgtgtttcttatgctggtcgaggccggccgccaactg
cgtgaggcaggcaagcgaggccccgacctcatggccatgctcgacctcgtggcgctggca
acggtcgcagatgtagccccgctgcgcgatgtgaaccgcgcctttgtgcgcacaggtctg
tccgtgatggccaaccgcgcccgcccggggcttgtggcgctgtccgatgtggctcggctt
gatgctgcgcccaatgcctatcacctcggctttgtttttgggccgcgcgtgaatgccggg
ggacgtgttgggcgcgccgatctgggggcgcgtcttctggcgtgcaatgacctccatgaa
gccaagtctctggccgaaaaactcaacgaactcaatgtagaacggcaagatgttgaagca
ggtgtccgcgctgctgcactggatcaggccgaagagcgcgggctggaggccccgcttgtc
tgggccgccggagacggctggcatcccggtgttgtcggcatcgtcgcctcacgcctgaaa
gaggccaccaaccgccctgccattgtcataggcttcgacggtgatgaaggcaaaggttcg
gggcgctcagtctcaggcgtcgatctgggacatgcgatccagaaattggccgcagagggg
cttttgatcaaaggcggcgggcacaaaatggccgccggtctgaccgtcgcacgagaaaaa
cttgaggccgccatggaccggctctccaagcttctggcgaaacagggcgcgggccaatcc
ggcccggctgatttgcgactggacgggttgctgatgccgggcggggccacaaccgagctt
gtcgaacagattgaggccgctggccctttcggcgcaggcgcgccgggcccccgttacgcc
tttgccgatcaaggtgttagttttgccaaacgcgtcggcgacagccacctgaaattgcgc
tttggcgacggcaccggccccacgcttgatgccattgcttttggggcctttgacacgccg
ctcgggcaggccttggaacaacatggcggcgcacgtttccacctggccggacggctcgac
atcaacacttggggcggccgccagaccgtgcaactgcggctggaagatgctgccctcgct
tga
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