Roseovarius rhodophyticola: RZS32_012990
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Entry
RZS32_012990 CDS
T10617
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
rrl Roseovarius rhodophyticola
Pathway
rrl02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
rrl00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
RZS32_012990 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rrl03021
]
RZS32_012990 (rpoD)
Transcription machinery [BR:
rrl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
RZS32_012990 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
Med21
Motif
Other DBs
NCBI-ProteinID:
WYK17325
UniProt:
A0ABZ2TDY1
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All DBs
Position
2558206..2560191
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AA seq
661 aa
AA seq
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MAAKDNDDSKPEDQDSEISLDMSQTAVKKMIAEARERGFITYDQLNKVLPPDQVSSEQIE
DVMSMLSEMGINIIEEEEAEEEEAKSTAVAEIGRKGEITLGSGKEEKLDRTDDPVRMYLR
EMGSVELLSREGEIAIAKRIEAGRNTMIAGLCESPLTFQAITIWRDELLGEDILLRDVID
LETTFGNQMGDEEGEPVVEAANMTSAPAAKPEASSEPELDADGNPIATDDDDDDDEQANM
SLAAMEAALKPRVLETLDRIAADYEKLSEMQDSRISATLNEDGSFSDKQEKTYQKLRAEI
VELVNELHLHNNRIEALIDQLYGINRRIMAIDSAMVKLADQARINRKEFIEEYRGRELDP
NWLDDMAKKDGRGWKMFMERSPDKVEELRADMAQVGQYVGLDIPEFRRIVNQVQKGEKEA
RQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYAT
WWIRQAITRSIADQARTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAEKLQMPLE
KVRKVMKIAKEPISLETPIGDEEDSQLGDFIEDKNVILPLDSAIQDNLKETTTRVLSSLT
PREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD
Q
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atggccgccaaagataatgacgactcgaagccggaagaccaggactcggaaatctctctt
gatatgagccagactgcggtcaagaaaatgatcgccgaggcgcgtgagcgcggctttatc
acctatgatcagctgaacaaggttttgccgccggatcaggtgtcttctgagcaaatcgaa
gacgtcatgtcgatgctcagcgagatgggtatcaacatcatcgaggaagaagaggccgaa
gaagaagaggccaaatccaccgccgtggccgagattggccgcaagggcgagatcacgctt
ggctcgggcaaggaagaaaagctcgaccgcacggacgacccggtgcgcatgtacctgcgc
gagatgggctcggtcgaattgctcagccgcgaaggcgagattgccattgccaaacgcatc
gaggccggccgcaacacgatgattgcgggcctctgcgaaagccccctgacattccaggca
attacaatctggcgtgacgaacttttgggtgaagacatcctgctgcgcgatgtgatcgat
ctggagaccacgttcggcaaccagatgggtgacgaagagggcgaaccggtggtggaagcc
gccaatatgacaagtgctcctgcggccaagcctgaagccagctccgagccggaactggac
gctgatggcaatccgattgccaccgatgacgatgatgatgacgacgaacaggccaatatg
agccttgctgcgatggaggccgcgctcaagccgcgtgtgcttgaaacgctggatcgcatc
gcggcggattacgagaaactctccgagatgcaggacagccggatctcggccactctgaac
gaagatggatctttctcggacaaacaggaaaagacctatcaaaagctgcgcgccgagatt
gttgagctggtgaatgagcttcacctgcacaacaaccggattgaagcgctgattgaccag
ctttacggcatcaaccgccggatcatggcgatcgacagcgccatggtgaaactcgccgat
caggcgcgcatcaaccgaaaggaattcatcgaggaataccgcgggcgagagcttgatccc
aactggcttgacgacatggccaagaaggacggccgcggctggaaaatgttcatggagcgc
agccccgacaaggtcgaggaactgcgcgccgacatggcccaggttgggcagtatgtgggc
ctcgacattcctgaattccgccgcatcgtgaaccaggtgcaaaagggcgagaaagaggcg
cgtcaggccaagaaggaaatggtcgaggcgaacctgcgcctggtgatttccatcgccaaa
aagtacacgaaccgtggcctgcaattccttgatcttattcaggaaggcaacattggcctg
atgaaggcggtggacaagttcgagtatcgccggggctacaaattctcgacttacgccaca
tggtggatccgtcaggcgatcacccggtcgattgccgaccaggcccgcacgatccgtatt
ccggtgcatatgatcgagacgatcaacaagctggtgcggacagggcgccagatgctgcac
gaaataggccgcgagccgacgccggaagagctggccgaaaagctgcagatgccgcttgag
aaggtccgcaaggtgatgaaaatcgccaaagagccgatttctctggaaacgcccattggc
gacgaggaagacagccagcttggggatttcatcgaggacaagaatgtgatcctgcctttg
gattcggcaattcaggacaacctgaaggaaaccacaacccgggtgctgtcatccctcacg
ccccgcgaagaacgcgtgctgcgcatgcgctttggcatcggcatgaacaccgaccacaca
ttggaagaagtgggccaacagttcagcgtgacccgcgaacgcatccgccagattgaggcc
aaggcgctgcgcaagctgaaacatccgagccggtcgcggaagttgaggagcttcttggac
cagtaa
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