KEGG   Roseovarius rhodophyticola: RZS32_015150
Entry
RZS32_015150      CDS       T10617                                 
Name
(GenBank) ribonuclease J
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
rrl  Roseovarius rhodophyticola
Pathway
rrl03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rrl00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    RZS32_015150
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rrl03019]
    RZS32_015150
Messenger RNA biogenesis [BR:rrl03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     RZS32_015150
SSDB
Motif
Pfam: RNase_J_b_CASP RNase_J_C Lactamase_B_2 Lactamase_B RMMBL Anti-Pycsar_Apyc1
Other DBs
NCBI-ProteinID: WYK17721
UniProt: A0ABZ2TDH3
LinkDB
Position
2973383..2975050
AA seq 555 aa
MSSERLIYLPLGGAGEIGMNAYVYGYGKPDQERLILVDLGVTFPDMDGSPGVDLIFPDIQ
WLAERSSQLEAVFVTHAHEDHVGAVAHYYEQLGVPIYARAFTANIARRKMEDHGHPEEAV
RTVSAWPEVTDAGPFRVGFVPISHSIPESSGLVIDTPAGRLVHSGDFKMDTDPVVGEPFD
EDLWRSLAEPGVRALMCDSTNVFTHHEGRSESMLGPDIEALIDGCKGAFVATTFASNVAR
VKTLAEAGQRAGRSICLMGRAMRRMIEASIETGVLGDFPRTVSPEDAREIPHENLMLIVT
GSQGERRAASAQLANGKYNGIELRDGDTFLFSSKTIPGNERGVIRIMNQFSEMGVDVIDD
SSGNYHVSGHANRPDLSRLHKILQPQVVVPMHGEHRHLREHVKLAGENRIGGVLAPNGTM
IDLSGNRAEVVGYVETGRTYLDGSVKIGALDGIVRDRIRMALNGHVTVNVILDEEDEPLG
EPWCEVRGLAETGSSRAPLIDVLEEDLSQFMGRAKSATLSDDDVLEDGLRKVVRNSAMGE
IGKKPEVTVIISRLS
NT seq 1668 nt   +upstreamnt  +downstreamnt
atgagcagtgaacgtttgatctatctgcccctgggcggggcgggcgagattgggatgaat
gcctatgtctatggctacggcaaaccggatcaggaacggctgatcctggtcgatttgggt
gtgacctttccggatatggatggcagccctggcgtagatctgatttttcctgatattcaa
tggcttgcagagcgatcttcacagctggaagcagtgtttgtcacccatgcgcatgaggat
cacgtaggcgctgtggcgcattactatgagcagcttggcgtgccgatatacgcgcgcgcc
ttcacggccaatattgcccgacgcaagatggaggatcacggacacccggaggaggctgtg
cgcaccgtgtctgcctggcccgaggtaacggatgccgggcctttcagggttgggtttgta
cccatatcccattcgatcccggaaagctctggtctggtcattgatacacctgcaggacgg
ctggtgcattcaggcgacttcaagatggataccgatccggtggtcggagagccgtttgac
gaagacctctggcggtctttggccgaaccgggtgtccgggctttgatgtgtgattccacc
aatgtgttcacgcatcatgagggccgctccgagagcatgcttggcccggatatcgaggcg
ttgattgatgggtgcaagggcgcgtttgtggcgacgacatttgccagcaacgtggcgcgc
gtgaagacgctggcagaggccggtcagcgcgcggggcggtcgatttgcctgatgggtcgg
gcgatgcggcgaatgattgaagcctcaattgaaacgggcgtcttgggggatttcccaaga
acagtgagcccggaggatgcgcgcgagatcccacacgagaacctgatgctcattgtgacc
ggaagccagggggagcgccgcgcggccagtgcgcaactggccaatggcaaatacaacggg
attgagttgcgggatggcgatacgttcctcttttcctccaagacgatccccggcaatgag
cgcggcgttatccgcatcatgaaccagttcagcgagatgggggtcgatgtcattgatgac
agcagcggaaactaccatgtctccggccatgccaaccgccctgatctgagccggttgcac
aagattttgcagccgcaggtcgtggtgccgatgcatggggagcaccggcatttgcgtgaa
catgtgaaactggcgggggaaaaccgcatcggtggggttttggcccccaatgggacgatg
atcgacctcagcggcaatcgcgccgaagtggtgggatatgtggaaactgggcgcacctat
ctggatggatcggtcaagatcggcgcgctggacggcattgtgcgcgaccggattcgcatg
gcgctgaatgggcatgtgacggtcaatgtgatcctggacgaagaggatgagccactgggg
gagccgtggtgtgaggtcagagggctggcggaaaccggaagtagccgcgcgcctctgatc
gatgtgctggaagaagatctcagccagttcatggggcgggcgaaatccgcaacgctgagc
gatgatgacgtgctggaggacgggttgcgcaaggttgttcggaactcggccatgggcgag
attggcaagaaaccggaagtgacggtgattatcagtcgactaagctga

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