Roseovarius rhodophyticola: RZS32_015260
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Entry
RZS32_015260 CDS
T10617
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rrl Roseovarius rhodophyticola
Pathway
rrl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rrl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RZS32_015260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rrl03019
]
RZS32_015260
Enzymes [BR:
rrl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RZS32_015260
Messenger RNA biogenesis [BR:
rrl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RZS32_015260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
ERCC3_RAD25_C
HEM4
AAA_22
AAA_11
Flavi_DEAD
CMS1
Motif
Other DBs
NCBI-ProteinID:
WYK17743
LinkDB
All DBs
Position
complement(2994885..2996165)
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AA seq
426 aa
AA seq
DB search
MYDFDMLGLAPQLNTAIKEAGLTEPTPIQNKAIPLALEGHDVLGLAQTGTGKTLAFGLPL
IQHLLDQPGKPREKTVKALILAPTRELVNQIADSLRNLTAKTKLRVVTVVGGQSIGKQIK
LLSRSTDILVATPGRLIDLMDRRALDLSTARHLVLDEADQMLDMGFIHDLRKIAPKLGTP
RQTMLFSATMPKQMEELSQAYLSNPKRVQVAPPGKAADKITQSVHFVPGPEKPSKLREIL
SNDPGALTLVFARTKHGAEKLMKGLVADGFNAASIHGNKTQGQRDRALKAFRQGTVNVLV
ATDVAARGIDIPGVAYVINYDLPEVADNYVHRIGRTARAGREGEAIAFCAHEEAGLLRDI
EKLMKITIPVAGGTPPTDFTARPKRGQKQGQRRRSGPPRNRSSKPAGNGQAPQGTKRRRP
RRRKAA
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
ttgtacgattttgacatgctgggccttgcgccccaattgaacacggccatcaaagaggcc
ggtctgactgaaccaacacctatccaaaacaaagccattccgctagccctcgaaggccat
gatgttctgggacttgcccagacgggcacaggcaaaaccctcgcctttggcctgccgctc
attcagcatttgctggatcagcccggcaagccgcgcgagaaaacggtcaaggcgctgatc
ctggcccccacccgcgaactggtgaaccagatcgccgacagcctgcgcaatctgacggct
aaaactaagctgcgtgttgtcaccgttgtgggtgggcaatccatcggcaaacagatcaag
cttctgagccggagtaccgatatcctcgtggctacgccgggccggttgatcgacctgatg
gaccgccgtgcgctcgatctttcaaccgcgcgtcatctggtgctggacgaggccgaccag
atgctcgacatgggctttatccatgacctgcgcaaaatcgcaccgaagctgggcaccccg
cgtcagaccatgctgttttcggccaccatgccaaaacagatggaagaactgagccaagcc
tatttgagcaatcccaaacgggtgcaggtggcacctccgggcaaagccgccgacaagatc
acccagtcggtccattttgtgcccggcccggaaaagccctccaagctgcgcgaaatcctg
tcgaatgaccccggtgcgctgactctggtctttgcgcgcaccaagcatggcgcggaaaag
ctgatgaagggtctggtggccgacgggttcaacgctgcttccattcacggcaacaagacc
caaggtcagcgcgaccgcgcgctcaaggcgttccggcaaggcactgtcaatgtactggtg
gccacggatgtggcggcccggggcatcgacattccgggtgtcgcctatgtgatcaactat
gatctgccagaagtggcggacaattatgtgcaccggattggccgcacggcacgcgccggg
cgagagggcgaagccattgccttttgcgcccatgaagaggccgggttgttgcgcgacatc
gagaaactgatgaaaatcacgatccctgtggcgggtggcacgccgccaacagatttcaca
gcgcgtcccaaacgaggccagaagcaagggcaacgccgtcgttcaggtccaccccggaac
aggtcatcgaaacctgcgggcaatggccaggcacctcaaggcaccaagaggcgcaggcct
cgccgtcgtaaggctgcctaa
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