Rickettsia rickettsii Morgan: RRM_00145
Help
Entry
RRM_00145 CDS
T03662
Symbol
sca1
Name
(GenBank) surface cell antigen Sca1
Organism
rrm
Rickettsia rickettsii Morgan
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Autotransporter
Motif
Other DBs
NCBI-ProteinID:
AJG33864
LinkDB
All DBs
Position
20187..25787
Genome browser
AA seq
1866 aa
AA seq
DB search
MNKLTEQHLLKKSRFLKYSLLASIAVGAAIPFEGMAMSKEAFRIDLSNKLLNHVSQLKGH
KDTTNTPQQIGTVIVPEPEINTYTPSEIREMKISNKPKASNPLKDVPIEDHYKVVARSKS
DVGKARKVRPITRRKTFAGIEKTKQSQNTYTPESTEQMPQKPEIIITASSPTVSPASNSF
ITAPNTPNTTLISPEHYTTAPGTPSSTPVTPYQPTSDSKPNDSLGANTPPNTNSKAARRL
SFSSSDPQQQAVQSSSQVKSEVPPKPTFVPLPIKKGSTEIVAGMVSNISRVNEMIGIKLA
EVTQAIKDTTGKKDKERLQKLYRQLTSTQKTTEVLKSRAEEIETKIKIGKNKDKIKKLEK
ELTSKNNKADRLFQKIEKIDIPANKVSIKSQETVPVTTASTEVSAFQAQQARINEARQSI
FNKNKSSGDNARKSNAGTKREKKKQEAQKQLSEIKKQEKAVKTASDKAKEVAASAKEETS
RTALRAMQDKMNGDSEQLNKIEENLKLLTPVVYNSSTGPTYKQSPKAKPTIPLSHGVQRI
LGEQPEDEEGYLVPIKVQQQPYTVMLPNQEIEDPIPSHSKDIYEAKVSQYINYLNRIQPN
QSNQAQIDSVIDSLATEMRKFSADQFSQKLDEIAHLAGIKAYEGLFEKLYEIQQARIPET
QKVYEQAEISQSYAEYEENSRKSSTPVLSPSSSAKSVISSNFEEKSALLQTTTTDESLRS
DNNWKNSAPYSSSPTLNKRGLEYLDLAGDAFVQNLKQSDTLTIETLDLITPTQNTTVAKS
DSSRKNNVSGSIPEIQQLQSEKMRTETLGVQDDLGLDLHYAPQETLTEESTYLVSSKKKQ
GNIIKRAVSKVESILHTNYSENRKRKRNGETSKQRTVDQEGEFGHAWGNENHKESSLSVV
SGFTKKATQLISLLDAKRTAILQTTSPSQRKSLSLVLQEIENDYREAIKISQELQQVLIR
KPEDIKAYNAKAEKKLDAIKSRADKHFDNIETDVDIGFNPNGGNSHSMPTANMDSLPKNL
AVTPPINVGSLYNSPQAQQFREDHKNIIINDRSQGRLNLVDSTITKGTQPLSNLSTIYES
VSDENLASETIYKTEQPKPSISYTNTSKRKLPIPLFRSAELDKKLEYLDLEDKLLEVEEA
RIVKEKQAIAKLNQYQDPENLEFKRLAMEALDLSLKESQLKAKRKAIGAEFSLNEKSSST
DVSIRSYSIDDISSVLSGAESNLSRSPSVSGLEDLNNMQLGELKSKKELELDTLNKEKIW
LDLDTESKPKVTESKPVFSCSSSVGSINSFSNDDLSSRDVVAPVDTLNIEINKDYVDTYI
RVLSNKIQEIEELSGSSSRSEELNHIKEAMAYISNRIQDVEELDEKMLLVINSQLQEHDE
KISSLLREEATDILAQLLLQEMLVSDGKSESTLPAGDEEQEDTEVSRQLSSLPADGKSES
TLPAGDEEQEDTEVSRQLSSLPALASSNESALALSDDREKECLALGDGSEDEESYDSGFE
EEEETIGQLSDSDGGNLKITEVDKVIPLEQEAKKEMQMQISENAPTLNQAKVVNTIVNNM
IRNRLDVNMSNNMAVGAGDEEESHIKRGLWMRGMYGTNNHGRVENMTGYRGTNKGATIGF
DAEIDNNIVGIAYSNVHSVFKFKNSKNNDKELINSHVVSIYGQKELPKNFALQALVSASK
NFIKDKTTYSYGDTKIKSNVKHRNHSYNAEALLHYNYLLQGKLVITPNIGLRYGKSRDGV
YNETGVNVQEIALTMKENNILSGIVGTKVTVPLKDALKFNNLGLTFQGAVEHNFKEKTQR
INRVVKIFDNTFKHNYLIPKQPKTSYNLGTGIIGSIKNTTISLDYNYYLNKHYRSHQGSV
KLKVNL
NT seq
5601 nt
NT seq
+upstream
nt +downstream
nt
atgaataagttaacagaacaacatttactaaaaaaatcaagatttttaaaatattctctg
cttgcctctattgcagtaggagctgcaataccttttgagggtatggcgatgagtaaagaa
gcatttcgtatcgatctcagtaataaattgttgaatcacgtgtcacaattaaaaggacac
aaagatacgacaaataccccgcagcagataggaacagtaattgtaccggaaccagaaata
aacacatatactccatctgaaataagagaaatgaaaatatctaacaaacctaaggcatct
aatccattaaaagatgttcctatagaggatcattataaagtggtagcacgtagtaagtct
gatgtcgggaaagcaagaaaagtacgaccaattactagacgcaaaacatttgcaggcatt
gaaaaaacaaaacaaagtcaaaatacttatactcctgaatcgacagaacaaatgcctcaa
aaaccagagattataataacagcgtcttcgcctactgttagcccagcttcaaatagtttt
atcactgcacctaatacaccaaatactaccctgatatcacctgaacattatactacggca
cctggtactccatcatcaacaccggtgactccgtatcagcctacttcagattctaaacca
aatgatagtttaggagctaatacaccaccaaacacaaactcaaaggcagcacgaagatta
tcgtttagcagtagcgacccgcaacaacaggcagtgcaatctagctcacaggttaaatca
gaagttcctccgaagccaacatttgtaccgttgcctataaaaaaaggcagtactgaaatt
gtagcaggaatggtaagtaatatatcacgcgttaatgagatgataggaatcaagttagct
gaagtaacacaggctattaaagataccacaggtaaaaaagataaagaacgattgcagaag
ttgtataggcagctaacttcaacacaaaaaacaacagaagtactcaagtcaagagctgaa
gagatagaaacaaaaatcaaaataggtaaaaataaagataaaataaagaaacttgaaaaa
gagttaacaagtaaaaacaataaagcagatagattatttcagaaaatagaaaaaatagat
attccagcaaataaagtttcgataaaatcgcaggaaacagttccggttacaacggcgtca
actgaagttagtgcgtttcaagcacagcaagcaagaattaatgaggctcggcaaagtata
tttaataaaaataaatcaagcggagataatgcaagaaaaagtaatgctggaacaaaaaga
gaaaagaaaaaacaagaagcacaaaagcagttatcagaaataaagaaacaagaaaaagct
gtaaaaacggcatcagataaagctaaagaagtagctgctagtgcaaaagaagaaacaagt
agaactgcattacgagccatgcaagataaaatgaatggtgattctgaacaattaaataag
atagaggaaaatctaaagttattaactcctgttgtttataatagttctaccggtcctact
tataagcagtcgccaaaagcaaagccaactataccattaagtcatggggttcagagaatt
ttaggtgaacaaccagaggatgaagaggggtacttagtgccaataaaagttcagcagcaa
ccttatacagtaatgttgccgaatcaagaaatagaggaccctattccaagtcattcaaaa
gatatttatgaggctaaggtttcacaatacattaattatttgaatagaatacagccaaat
cagtcaaatcaagctcaaatagatagtgtaatagatagtttagcaacagaaatgagaaag
tttagtgcggatcaatttagtcaaaaattagatgagattgcacatcttgccggtataaag
gcatatgaaggtttgttcgagaaattatatgaaattcagcaagctagaattccagaaact
caaaaagtatatgagcaagcggaaatatctcagtcttatgcagagtatgaagagaattca
agaaaaagcagtactccagtattatcaccctcgtcttcagctaaaagtgtaatatcatca
aattttgaagaaaaatcagcattgttacaaaccacaactacagatgaaagcttgagatct
gacaacaattggaaaaattctgcaccatattcttcaagtccaacgcttaataaaagagga
ttagaatatttagatttagctggcgacgcgttcgttcagaatctaaaacaatctgatacg
ttaactatagaaactcttgatttaataacgccaacacaaaatacaactgttgctaaaagt
gactcatcgaggaaaaataatgtaagtggaagtattccggagatacaacaactgcaatca
gaaaaaatgcgtacagaaactttaggtgtgcaggatgatctagggctagatttacattat
gcacctcaagaaactttaactgaagaaagtacctatttagtttctagtaagaaaaaacaa
ggtaatataataaagagagctgtatcaaaagtagagtcaattttgcacacaaattattca
gagaacagaaaaaggaaaagaaatggagaaacctcaaagcaaagaacagtagatcaagag
ggagaatttggccacgcttggggaaatgagaatcataaggagtctagtttaagtgtagtt
agtggattcacaaaaaaggcaactcagcttataagccttttagatgcaaagagaaccgca
atactgcaaacaaccagtccttcacaacgaaaatcacttagtttagttttacaggaaata
gaaaatgattaccgagaagcaattaaaatctctcaagaattacagcaggtattaatacgc
aaaccggaagatataaaagcttataatgcaaaagcagaaaaaaaattggatgctattaaa
agcagagcagataaacactttgataatatagaaacagatgtagatattggatttaatcca
aatgggggaaatagtcattctatgccgactgctaatatggatagcttaccaaaaaattta
gctgtaaccccacctataaatgtagggtcactatataactctccgcaagctcaacaattt
cgagaagatcataaaaatattataataaatgatagatcacaaggtagactaaatttggtt
gatagtactattacaaaaggtacacagccattatctaatttatctactatatatgagtcg
gttagtgatgagaatttagcatcagaaacaatatataagacagagcaacctaagccatct
ataagttacacgaatactagtaaacgaaaattacctataccattattcagaagtgccgag
cttgataagaaattagagtatttagatttagaagataaactattagaagtagaggaagct
agaatagttaaggaaaagcaagctattgccaaattgaatcaatatcaagatccagaaaac
ctagaatttaagcggttagctatggaagcactagacttatctttaaaagaatcacaatta
aaagcaaaaaggaaagccataggagcagaattttctttaaatgaaaagtcttcaagcaca
gatgtatcaatacgttcctattcaattgatgacataagcagtgtacttagtggtgcagaa
tcaaatctatcccgttcaccttcggttagtggcttagaggatttaaacaatatgcaatta
ggggaattaaaatctaaaaaggaattggagttagatactttaaataaagaaaagatttgg
ttagatctagatactgaatctaaacctaaggtaactgagagtaagccggtattttcatgt
tcatcttcagttggtagcataaacagcttctctaatgatgatttgagtagtcgtgatgtt
gtagctccggtagatactctaaatatagaaattaataaagattatgtagatacctatata
agagtattaagcaataaaatacaagaaatagaagaattgtctggctcaagttctagaagt
gaggaacttaatcatattaaagaagcaatggcttatataagtaatcgtatacaggatgta
gaggaattagatgaaaaaatgcttttagtaataaattcacaattacaagaacatgatgaa
aaaatttcttcgttacttcgcgaagaagctacagatattcttgctcagttattgctacaa
gaaatgttagtgtcggatggtaaatcagaatctaccttacctgcaggagatgaagaacaa
gaagacacagaagtaagtagacaattatcttcattacctgcagatggtaaatcagaatct
accttacctgcaggagatgaagaacaagaagacacagaagtaagtagacaattatcttca
ttacctgcacttgcatcaagtaatgagagtgcattagcattaagtgacgatagagaaaag
gaatgtttagcattaggcgatggtagcgaagatgaagaaagttatgattcaggatttgaa
gaggaagaagaaacaataggacaattatccgattccgatgggggtaatcttaaaataacg
gaagttgataaggttattcctcttgaacaggaagcaaaaaaagaaatgcaaatgcaaatt
tcagaaaacgctcctactttaaatcaagcgaaagttgttaatactattgtaaataatatg
attcgtaacagattagatgtgaatatgtctaataatatggcagtgggagccggtgatgaa
gaagagtctcatataaaaagaggtttgtggatgcgtggtatgtacggcactaataatcat
ggacgcgttgagaatatgaccggttatagaggtactaacaaaggtgctactatcgggttc
gatgctgaaatcgacaataatatcgtaggtatagcttatagtaatgttcattcagtattt
aaatttaaaaatagtaaaaataatgataaagaacttattaatagtcatgtggtttctatt
tacggacaaaaagaattaccgaagaattttgcactacaagctttagtatctgcttctaaa
aactttattaaagataaaacaacttattcatatggtgatactaaaattaaaagtaatgta
aaacatcgtaatcatagttataatgcggaagcattactgcattataattatcttttgcag
ggcaagctcgttattaccccgaatatcggcttaagatacgggaagtcacgagatggggta
tataatgaaaccggtgttaacgtacaagaaatagctcttacaatgaaagagaataatata
ttgtccggaattgtcggtactaaagtcacagtacctttaaaagatgctctaaaatttaat
aatttaggtctaacattccaaggagcggtagaacataattttaaagagaaaacccaaaga
ataaatagagttgttaaaatatttgataatacattcaaacataattatctaataccgaag
caaccgaaaacatcctataatttaggaacgggtattataggcagtatcaaaaatactact
atttcgttggattataattattatctaaataaacattatagaagtcatcaaggtagtgtt
aagcttaaggtaaacctataa
DBGET
integrated database retrieval system
